View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_20 (Length: 437)
Name: NF15927_high_20
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 34201857 - 34201448
Alignment:
| Q |
18 |
ggaatagtaaccaaaatccaaagtcctatgaatctccaacatcaaagatggaatcagcttacacagttcttcaagcatggaaatctgcaatcactgatga |
117 |
Q |
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| T |
34201857 |
ggaatagtaaccaaaatccaaagtcctatgaatctccaacatcaaagatggaatcagcttacacagttcttcaagcatggaaatctgcaatcactgatga |
34201758 |
T |
|
| Q |
118 |
ccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtgcaaatcctgaaaatggaataacttctacaacagct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34201757 |
ccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtgcaaatcctgaaaatggaataacttctacaacagct |
34201658 |
T |
|
| Q |
218 |
tctacttcagtagttcttgctggaatagatctaaaccatgcaaaccttgaaggaacacttgtacaagaattatcattactcactgatatgtcattacttc |
317 |
Q |
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| T |
34201657 |
tctacttcagtagttcttgctggaatagatctaaaccatgcaaaccttgaaggaacacttgtacaagaattatcattactcactgatatgtcattacttc |
34201558 |
T |
|
| Q |
318 |
atctcaatagtaacagattcagtggaacagttcctgaaacattcaaagatcttgtttcacttcaagagttagacctcagtaataaccaactttcaggttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34201557 |
atctcaatagtaacagattcagtggaacagttcctgaaacattcaaagatcttgtttcacttcaagagttagacctaagtaataaccaactttcaggttc |
34201458 |
T |
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| Q |
418 |
ttttcctttg |
427 |
Q |
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|||||||||| |
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| T |
34201457 |
ttttcctttg |
34201448 |
T |
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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 43029966 - 43030063
Alignment:
| Q |
85 |
tcttcaagcatggaaatctgcaatcactgatgaccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtg |
182 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||| ||||| | ||| |||| | ||||| ||||| |||||||||||||| |||| |
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| T |
43029966 |
tcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttcttataaaggaatcttttgtg |
43030063 |
T |
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