View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_22 (Length: 424)
Name: NF15927_high_22
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_22 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 9836789 - 9836383
Alignment:
| Q |
18 |
gttagagcgagcagtgtccgtttcaatggaacagagctccaatccattcataaaagctgtgacagtaaatggtgagggttaataaaagtaaatgataact |
117 |
Q |
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| T |
9836789 |
gttagagcgagcagtgtccgtttcaatggaacagagctccaatccattcataaaagctgtgacagtaaatggtgagggttaataaaagtaaatgataact |
9836690 |
T |
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| Q |
118 |
acaagaagcatacttgatcatgatatagcacacattaataatgtgtttgagtaaatagcttaatttagagcttatgtataatgtaattctacaatcaaag |
217 |
Q |
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| T |
9836689 |
acaagaagcatacttgatcatgatatagcacacattaataatgtgtttgagtaaatagcttaatttagagcttatgtataatgtaattctacaatcaaag |
9836590 |
T |
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| Q |
218 |
gaggcatttggataatctattttcattgttttcataagttagtttagggtttgttgaaaaaagctctataaagcacttactgaagtgtttattgtctata |
317 |
Q |
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| T |
9836589 |
gaggcatttggataatctattttcattgttttcataagttagtttagggtttgttgaaaaaagctctataaagcacttactgaagtgtttattgtctata |
9836490 |
T |
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| Q |
318 |
aattttattgagaacactggtccagcttttttgtcaacatttatatacaaatttaaaagttttaatgttaaaaatgtatgatagcatcataggtatttgc |
417 |
Q |
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| T |
9836489 |
aattttattgagaacactggtccagcttttttgtcaacatttatatacaaatttaaaagttttaatgttaaaaatgtatgatagcatcataggtatttgc |
9836390 |
T |
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| Q |
418 |
agttctg |
424 |
Q |
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| T |
9836389 |
agttctg |
9836383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 9847667 - 9847261
Alignment:
| Q |
18 |
gttagagcgagcagtgtccgtttcaatggaacagagctccaatccattcataaaagctgtgacagtaaatggtgagggttaataaaagtaaatgataact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847667 |
gttagagcgagcagtgtccgtttcaatggaacagagctccaatccattcataaaagctgtgacagtaaatggtgagggttaataaaagtaaatgataact |
9847568 |
T |
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| Q |
118 |
acaagaagcatacttgatcatgatatagcacacattaataatgtgtttgagtaaatagcttaatttagagcttatgtataatgtaattctacaatcaaag |
217 |
Q |
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| T |
9847567 |
acaagaagcatacttgatcatgatatagcacacattaataatgtgtttgagtaaatagcttaatttagagcttatgtataatgtaattctacaatcaaag |
9847468 |
T |
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| Q |
218 |
gaggcatttggataatctattttcattgttttcataagttagtttagggtttgttgaaaaaagctctataaagcacttactgaagtgtttattgtctata |
317 |
Q |
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| T |
9847467 |
gaggcatttggataatctattttcattgttttcataagttagtttagggtttgttgaaaaaagctctataaagcacttactgaagtgtttattgtctata |
9847368 |
T |
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| Q |
318 |
aattttattgagaacactggtccagcttttttgtcaacatttatatacaaatttaaaagttttaatgttaaaaatgtatgatagcatcataggtatttgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847367 |
aattttattgagaacactggtccagcttttttgtcaacatttatatacaaatttaaaagttttaatgttaaaaatgtatgatagcatcataggtatttgc |
9847268 |
T |
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| Q |
418 |
agttctg |
424 |
Q |
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||||||| |
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| T |
9847267 |
agttctg |
9847261 |
T |
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