View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15927_high_26 (Length: 399)

Name: NF15927_high_26
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15927_high_26
NF15927_high_26
[»] chr3 (8 HSPs)
chr3 (19-391)||(23036861-23037233)
chr3 (19-391)||(23039738-23040110)
chr3 (19-391)||(23146613-23146985)
chr3 (21-377)||(23017949-23018305)
chr3 (64-377)||(23033589-23033902)
chr3 (240-391)||(23025185-23025336)
chr3 (240-391)||(23141182-23141333)
chr3 (240-391)||(23149792-23149943)
[»] scaffold0554 (1 HSPs)
scaffold0554 (79-373)||(5471-5765)
[»] chr6 (1 HSPs)
chr6 (19-391)||(21780628-21781000)
[»] chr1 (1 HSPs)
chr1 (19-188)||(12610718-12610884)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 23036861 - 23037233
Alignment:
Q  19 acgtctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcag 118  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036861 acgtctacgagatcttcttctactctaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcag 23036960  T
Q  119 tttgccgatgaatcctctctagcttaggcctcaaaccagtaatacactgtagccatttagctgagggaaacaaatctcccaagttaaaaccccctgcaac 218  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036961 tttgtcgatgaatcctctccagcttaggcctcaaaccagtaatacgctgtagccatttagctgagggaaacaaatctcccaagttaaaaccccctgcaac 23037060  T
Q  219 ctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23037061 ctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtaca 23037160  T
Q  319 gcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23037161 gcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctc 23037233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 23039738 - 23040110
Alignment:
Q  19 acgtctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcag 118  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23039738 acgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcag 23039837  T
Q  119 tttgccgatgaatcctctctagcttaggcctcaaaccagtaatacactgtagccatttagctgagggaaacaaatctcccaagttaaaaccccctgcaac 218  Q
    |||| ||||||| |||||| ||||||||||||| |||||||| |  ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  23039838 tttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaacaaatctcccaagtcaaaacccccggcaac 23039937  T
Q  219 ctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtaca 318  Q
    |||||| | |||| |||||| |||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||||||||| || |  ||| |||||    
T  23039938 ctttattgattgttttaccactgatataaatttgtcttggtccttgcattcattgccaaaggcagcccttgaaacaattgtgtatattgaagaacgtaca 23040037  T
Q  319 gcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctc 391  Q
    |||||||  || ||||||||| |||| | | |||||||||||||||||||||||||||||| |||||||||||    
T  23040038 gcttcagtaatgttgattggaattccgtcccgtgaagcaatccatttgacaagattggaaaacacttcttctc 23040110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 23146613 - 23146985
Alignment:
Q  19 acgtctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcag 118  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23146613 acgtctatcagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttcaaatatctgatcag 23146712  T
Q  119 tttgccgatgaatcctctctagcttaggcctcaaaccagtaatacactgtagccatttagctgagggaaacaaatctcccaagttaaaaccccctgcaac 218  Q
    |||| ||||||| |||||| ||||||||||||| |||||||| |  ||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  23146713 tttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaacaaatctcccaagtcaaaaccccctgcaac 23146812  T
Q  219 ctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtaca 318  Q
    |||||| | |||| |||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| || |  ||| |||||    
T  23146813 ctttattgattgttttaccactgatataaatttatcttggtctttgcattcattgccaaaagcagccctcgaaacaattgtgtatattgacgaacgtaca 23146912  T
Q  319 gcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctc 391  Q
    |||||||  || ||||||||| ||||   |||||| |||||||||||| |||||||| ||| |||||||||||    
T  23146913 gcttcagtaatgttgattggaattccgacctgtgaggcaatccatttggcaagattgaaaaacacttcttctc 23146985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 21 - 377
Target Start/End: Original strand, 23017949 - 23018305
Alignment:
Q  21 gtctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcagtt 120  Q
    |||||||||||||||| | || | |||||||||| ||||| |||||||||||||||||  |||||| ||||  |||||||| |||||||||| ||| |||    
T  23017949 gtctaccagatcttctgctacctcaccttgatcacctttgacttttgtgtacttttcccttttatgttcatcaatgatgttctctaatatctcatcggtt 23018048  T
Q  121 tgccgatgaatcctctctagcttaggcctcaaaccagtaatacactgtagccatttagctgagggaaacaaatctcccaagttaaaaccccctgcaacct 220  Q
    ||  ||||||   |||| | ||||||||||||||| |||| | | || ||||||||||  || |||||| |||||||||||| ||||||  |||||| ||    
T  23018049 tgttgatgaaatttctcaatcttaggcctcaaaccggtaacatattgaagccatttagaagaaggaaacgaatctcccaagtcaaaacctgctgcaatct 23018148  T
Q  221 ttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagc 320  Q
    |||  | || | |||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||| || |  |||||||||||    
T  23018149 ttacagattcttttaccactgatataaatttttcttggtctttgcatttattgccaaaggcagcccttgaaacaattgtgtatatcgaagaaagtacagc 23018248  T
Q  321 ttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattgga 377  Q
    ||||| ||  |||||||| | ||| |||| |||||||||| | |||| |||||||||    
T  23018249 ttcagtgaagttgattggcgatccattctctgaagcaatcgacttgataagattgga 23018305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 64 - 377
Target Start/End: Original strand, 23033589 - 23033902
Alignment:
Q  64 tttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcagtttgccgatgaatcctctctagcttaggcctcaaaccagtaatac 163  Q
    |||||||||||| ||| ||||||||||| |||||||||||| || |||| |||| |||| ||||||| | |||| ||||||||||| | |||||||| |     
T  23033589 tttgtgtactttgcctttttatgctcatcgatgatgttttcaaacatctcatcattttgtcgatgaaacttctcaagcttaggcctaataccagtaacat 23033688  T
Q  164 actgtagccatttagctgagggaaacaaatctcccaagttaaaaccccctgcaacctttatggtttgtcttaccaatgatataaatttttcttggtcttt 263  Q
      || ||||||||||  || |||||||||||||||||||||||||| ||||||| |||||  |||||| ||||||  ||||||||||||||||||||| |    
T  23033689 gttgaagccatttagaagaaggaaacaaatctcccaagttaaaacctcctgcaatctttagtgtttgttttaccaccgatataaatttttcttggtctct 23033788  T
Q  264 gcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattggagttcctttctgtgaagcaatccat 363  Q
    ||||||||||||||| || | ||| |||||||||||||| || |  |||| |||||||||||  |  ||||  || | ||| ||||| |||||||||  |    
T  23033789 gcattcattgccaaaggcggcccttgaaacaattgtgtatattgaagaaattacagcttcagtaaggttgaagggtgatccattctgcgaagcaatcgtt 23033888  T
Q  364 ttgacaagattgga 377  Q
    ||||||||||||||    
T  23033889 ttgacaagattgga 23033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 391
Target Start/End: Original strand, 23025185 - 23025336
Alignment:
Q  240 tgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattgga 339  Q
    ||||||||||||||||||||||||| |||  |||||||| |||||  | |||||||| ||||| || |  ||||||||||||| || ||  ||||| ||     
T  23025185 tgatataaatttttcttggtctttgaatttcttgccaaaggcagattttgaaacaatagtgtatattgaagaaagtacagcttgagtgaggttgatgggt 23025284  T
Q  340 gttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctc 391  Q
    | ||||| ||  |||||||||||||||||||||||||| | | |||||||||    
T  23025285 gatccttccttcgaagcaatccatttgacaagattggagaactcttcttctc 23025336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 391
Target Start/End: Original strand, 23141182 - 23141333
Alignment:
Q  240 tgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattgga 339  Q
    |||||||||||| |||||||| ||||| |  |||||||| |||||  | |||| ||| ||||| || |  ||||||||||||| || ||  ||||| |      
T  23141182 tgatataaatttgtcttggtcgttgcacttcttgccaaatgcagattttgaaagaatagtgtatattgaagaaagtacagcttgagtgaggttgatggat 23141281  T
Q  340 gttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctc 391  Q
    | |||||||| |||||  |||||||||||||||||||| | | |||||||||    
T  23141282 gatcctttctttgaagttatccatttgacaagattggagaactcttcttctc 23141333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 391
Target Start/End: Original strand, 23149792 - 23149943
Alignment:
Q  240 tgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattgga 339  Q
    |||||||||||| |||||||||||| | |  |||||||| ||||   | |||||||| ||||| ||  | |||| |||||||| || ||  ||||| ||     
T  23149792 tgatataaatttgtcttggtctttgaacttcttgccaaaggcagcttttgaaacaatggtgtatattatagaaattacagcttgagtgaggttgatgggt 23149891  T
Q  340 gttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctc 391  Q
    | ||||| ||  ||||||||||||||||||||||| || ||| |||||||||    
T  23149892 gatccttccttcgaagcaatccatttgacaagattagagagctcttcttctc 23149943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 79 - 373
Target Start/End: Complemental strand, 5765 - 5471
Alignment:
Q  79 tctttatgctcattgatgatgttttctaatatctgatcagtttgccgatgaatcctctctagcttaggcctcaaaccagtaatacactgtagccatttag 178  Q
    |||||||||||||||||||||||||| | ||| ||||||||||| ||||||| | |||| ||||||||||||||||||||||     |||||||||||||    
T  5765 tctttatgctcattgatgatgttttcaagtatttgatcagtttgtcgatgaagcatctcaagcttaggcctcaaaccagtaacttgttgtagccatttag 5666  T
Q  179 ctgagggaaacaaatctcccaagttaaaaccccctgcaacctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaa 278  Q
    | || ||||||||||||||||||| |||||| ||||||| | |||| |||||| |||||| ||||||||||||||||||||||||||||| |||||||||    
T  5665 cagatggaaacaaatctcccaagtcaaaacctcctgcaatccttattgtttgttttaccactgatataaatttttcttggtctttgcatttattgccaaa 5566  T
Q  279 cgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagat 373  Q
     || | |||||||||||||||||| || |  |||| || |||||  | || ||||||||| | ||| |||| |||||||||||||||||||||||    
T  5565 ggctgccctcgaaacaattgtgtatattgaagaaattaaagcttttgtgagattgattggtgatccgttctctgaagcaatccatttgacaagat 5471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 21780628 - 21781000
Alignment:
Q  19 acgtctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcag 118  Q
    |||||||| ||||||||||| |||| ||||| ||| ||||| | |||||||| |||| |||||||||| || |||||||||||||| |||||||||||||    
T  21780628 acgtctacgagatcttcttctacttcaccttcatcttctttcggttttgtgtgctttgcctctttatggtccttgatgatgttttcaaatatctgatcag 21780727  T
Q  119 tttgccgatgaatcctctctagcttaggcctcaaaccagtaatacactgtagccatttagctgagggaaacaaatctcccaagttaaaaccccctgcaac 218  Q
    |||| || ||||  ||||| |||||||||||||| ||||||| |   |  | ||||||||  || ||||||||||||||||| ||||||||  ||| |||    
T  21780728 tttgtcgttgaaaactctcaagcttaggcctcaatccagtaacatgttcaatccatttagtagaaggaaacaaatctcccaaattaaaacctgctgaaac 21780827  T
Q  219 ctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtaca 318  Q
     ||||| | |||| |||  | ||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||| ||||| |  |  |||  ||||    
T  21780828 ttttatcgattgttttataactgatataaatttttcttggtctttgcatttatttccaaaggcggacctcgaaacaatagtgtatactgaagaagttaca 21780927  T
Q  319 gcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctc 391  Q
    |||| || ||  |||||||| | ||| ||||||||| |||||||| ||||||||||||| ||||| |||||||    
T  21780928 gcttgagtgaggttgattggcgatccattctgtgaaacaatccatctgacaagattggagagcacctcttctc 21781000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 12610718 - 12610884
Alignment:
Q  19 acgtctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgatcag 118  Q
    ||||||||||||||||||||  ||  |||||||   || || |||||||   ||||| | |||||||| ||| |||  |||||||||| ||| ||||||     
T  12610718 acgtctaccagatcttcttcttctccaccttgactttcatttgcttttg---actttgcttctttatgttcagtgacaatgttttctagtatttgatcaa 12610814  T
Q  119 tttgccgatgaatcctctctagcttaggcctcaaaccagtaatacactgtagccatttagctgagggaaa 188  Q
    |||||| ||| | |||||| || |||||||||||||| | || ||  || |||||||| ||||| |||||    
T  12610815 tttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttcgctgaaggaaa 12610884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University