View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15927_high_3 (Length: 637)

Name: NF15927_high_3
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15927_high_3
NF15927_high_3
[»] chr3 (6 HSPs)
chr3 (21-633)||(49302717-49303334)
chr3 (22-142)||(41649949-41650071)
chr3 (22-145)||(49501494-49501619)
chr3 (22-111)||(2447630-2447719)
chr3 (22-145)||(49742061-49742186)
chr3 (25-145)||(23029647-23029769)
[»] chr4 (15 HSPs)
chr4 (22-145)||(42118974-42119099)
chr4 (23-139)||(45042972-45043090)
chr4 (25-141)||(37694477-37694595)
chr4 (23-129)||(52032665-52032771)
chr4 (22-145)||(52789395-52789520)
chr4 (22-145)||(33985411-33985536)
chr4 (22-145)||(47020065-47020189)
chr4 (23-145)||(43502248-43502372)
chr4 (22-125)||(779418-779521)
chr4 (22-142)||(54808966-54809088)
chr4 (21-126)||(34939320-34939425)
chr4 (22-131)||(51242826-51242935)
chr4 (21-145)||(54703637-54703763)
chr4 (22-96)||(36046868-36046942)
chr4 (60-145)||(9242920-9243006)
[»] chr2 (12 HSPs)
chr2 (22-145)||(4616600-4616725)
chr2 (22-145)||(32737834-32737959)
chr2 (22-142)||(41192345-41192467)
chr2 (22-145)||(5290663-5290787)
chr2 (22-145)||(26257738-26257863)
chr2 (22-125)||(5814497-5814600)
chr2 (22-145)||(21083768-21083892)
chr2 (22-145)||(34619863-34619988)
chr2 (23-145)||(37057199-37057323)
chr2 (22-129)||(2195130-2195236)
chr2 (22-129)||(6728636-6728743)
chr2 (22-145)||(1887918-1888043)
[»] chr7 (8 HSPs)
chr7 (22-145)||(39283989-39284114)
chr7 (22-143)||(14678306-14678429)
chr7 (22-145)||(4035114-4035239)
chr7 (22-145)||(37450002-37450127)
chr7 (22-142)||(3742332-3742450)
chr7 (23-144)||(40144746-40144869)
chr7 (22-111)||(33802978-33803067)
chr7 (60-145)||(8260879-8260966)
[»] chr8 (10 HSPs)
chr8 (21-142)||(1217794-1217917)
chr8 (26-145)||(4759175-4759295)
chr8 (27-145)||(5913083-5913203)
chr8 (23-145)||(9039665-9039789)
chr8 (27-143)||(42182662-42182780)
chr8 (22-147)||(2766825-2766952)
chr8 (22-129)||(35161624-35161730)
chr8 (22-108)||(15739669-15739755)
chr8 (22-110)||(23810819-23810906)
chr8 (22-129)||(4322714-4322821)
[»] chr6 (3 HSPs)
chr6 (22-143)||(30634077-30634200)
chr6 (22-145)||(3515180-3515305)
chr6 (36-145)||(11599019-11599130)
[»] chr1 (11 HSPs)
chr1 (22-145)||(33686506-33686631)
chr1 (22-129)||(49150562-49150669)
chr1 (22-143)||(7014736-7014859)
chr1 (22-143)||(22605440-22605563)
chr1 (22-145)||(15399069-15399194)
chr1 (22-142)||(30858499-30858621)
chr1 (23-140)||(1671290-1671408)
chr1 (21-129)||(43138610-43138718)
chr1 (22-145)||(12926827-12926952)
chr1 (22-110)||(10308509-10308597)
chr1 (49-111)||(41871767-41871829)
[»] scaffold0051 (1 HSPs)
scaffold0051 (22-145)||(20093-20218)
[»] chr5 (8 HSPs)
chr5 (22-145)||(1081850-1081975)
chr5 (22-145)||(18172097-18172222)
chr5 (22-145)||(43147388-43147513)
chr5 (22-145)||(7662166-7662291)
chr5 (22-145)||(12144046-12144171)
chr5 (27-145)||(40033968-40034089)
chr5 (22-146)||(34954047-34954173)
chr5 (22-145)||(2786732-2786857)
[»] scaffold0753 (1 HSPs)
scaffold0753 (60-145)||(3998-4085)
[»] scaffold0217 (1 HSPs)
scaffold0217 (60-146)||(25597-25685)


Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 21 - 633
Target Start/End: Complemental strand, 49303334 - 49302717
Alignment:
Q  21 tgtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggc 120  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||||||    
T  49303334 tgtgtaaaaaccaatcaaaagcattgattaccgtcctagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcgcagaggc 49303235  T
Q  121 tcagtggtgtg--acttaagtcacgcatgccgggcacaa-caaaatgtgctgggtgaaaatactaaaataacaataggcatattaacatttatcattaaa 217  Q
    |||||||||||  ||||||||||||||||| | || | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49303234 tcagtggtgtgtgacttaagtcacgcatgcagagcgcgagcaaaatgtggtgggtgaaaatactaaaataacaataggcatattaacatttatcattaaa 49303135  T
Q  218 aaacatgattatttaagatttctcaacggggtaatgtgacgatatttttcatttctttgtaatatatcttttgattttcatatatgcaaatccgtaaaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49303134 aaacatgattatttaagatttctcaacggggtaatgtgacgatatttttcatttctttgtaatatatcttttgattttcatatatgcaaatccgtaaaat 49303035  T
Q  318 aagttgacagagaatgaaggcaggtcaaacggggtaaacattttgaaatgtaccaacactaacctgagacagagataaatgactgcatgaacatgaaaat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49303034 aagttgacagagaatgaaggcaggtcaaacggggtaaacattttgaaatgtaccaacactaacctgagacagagataagtgactgcatgaacatgaaaat 49302935  T
Q  418 caagatacaagt-cttggtgcaattttgccttctttttaacag-nnnnnnnnnnnntgtctattgcataatattcagtgagactaacttcctatgaaatt 515  Q
    |||||||||||| ||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||    
T  49302934 caagatacaagtccttggtgcaattttgccttctttttaacagaaaaaaaaaaaaatgtctattgcataatattcagtgagactaacttcctatgaaatt 49302835  T
Q  516 gtaccaacaaaaagaaaaagttttcccaatgacatgttactctggatgaacaagggtgaataatgccttagttctttggatctttagccccctttctgtg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49302834 gtaccaacaaaaagaaaaagttttcccaatgacatgttactctggatgaacaagggtgaataatgccttagttctttggatctttagccccctttctgtg 49302735  T
Q  616 attctgtcactaattgtt 633  Q
    ||||||||||||||||||    
T  49302734 attctgtcactaattgtt 49302717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 41650071 - 41649949
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||| |||||| ||||||||| |||||||||||||||||||||| ||| | |||||||| | | |||||    
T  41650071 gtgtaaaatccaatcaaaaccattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaaattaactcgcgcataggct 41649972  T
Q  122 cagtggt--gtgacttaagtcac 142  Q
    |||| ||  ||||||||||||||    
T  41649971 cagtagtgcgtgacttaagtcac 41649949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 49501494 - 49501619
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| | |||||||| ||||||  ||||||| |||||||||||||||| |||||||||||||| ||||||| ||| |||||||||  | | | |||    
T  49501494 gtgtaaaatctaatcaaaatcattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcacgcataagct 49501593  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  49501594 cagtggtgcgtgacttaagtcacgca 49501619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 2447719 - 2447630
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcg 111  Q
    |||||||| |||||||||| ||||||  ||||||| |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||    
T  2447719 gtgtaaaatccaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccactggccaacttgcgccagttaactcg 2447630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 49742061 - 49742186
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  |  |||| |||||||||||||||| ||||| ||||||||| |||||| ||| |||||||||| | | || ||    
T  49742061 gtgtaaaatccaatcaaaaccattgactattgtccaagaaacgtttgtgcttcagtttctaccaccgggcaacttgcgcaagttaactcgcgcatagact 49742160  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  49742161 cagtggtgcgtgacttaagtcacgca 49742186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 23029769 - 23029647
Alignment:
Q  25 taaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcag 124  Q
    ||||| |||||||||| ||||||  ||||||| |||||||||| || || ||||| |||||||||||||||   || |||||||||  | | ||||||||    
T  23029769 taaaatccaatcaaaaccattgactaccgtccaagaaacgtttctgtttcagtttctaccaccggccaactagggcaagttaactcccgcataggctcag 23029670  T
Q  125 tggtg--tgacttaagtcacgca 145  Q
    |||||  ||||||||||||||||    
T  23029669 tggtgcatgacttaagtcacgca 23029647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 42119099 - 42118974
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||    
T  42119099 gtgtaaaaaccaatcaaaagcattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggct 42119000  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  42118999 cagtggtgcgtgacttaagtcacgca 42118974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 45042972 - 45043090
Alignment:
Q  23 tgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctc 122  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||   |||||||||    
T  45042972 tgtaaaaaccaatcaaaagcattcaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttacgcaagttaactcacatagaggctc 45043071  T
Q  123 agtggt--gtgacttaagt 139  Q
    ||||||  |||||||||||    
T  45043072 agtggtgcgtgacttaagt 45043090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 37694477 - 37694595
Alignment:
Q  25 taaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcag 124  Q
    ||||||||||||||||||||||| || ||||||| |||||| ||||||| |||||||||||||||||||||| |||  ||||||||| ||||||||||||    
T  37694477 taaaaaccaatcaaaagcattgaccatcgtcccaaaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaggttaactcgcgtagaggctcag 37694576  T
Q  125 tggt--gtgacttaagtca 141  Q
    ||||  |||||||||||||    
T  37694577 tggtgcgtgacttaagtca 37694595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 52032665 - 52032771
Alignment:
Q  23 tgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctc 122  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||| || ||| |||||||||| | | ||||||    
T  52032665 tgtaaaaaccaatcaaaagcatttaccaccgtcccaaaaacgtttgtgctttagtttttaccaccggccaatttgcgcaagttaactcgcgcataggctc 52032764  T
Q  123 agtggtg 129  Q
    |||||||    
T  52032765 agtggtg 52032771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 52789520 - 52789395
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||||||| |||||||||||||| ||||||| ||| |||||||||| | | |||||    
T  52789520 gtgtaaaaaccaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataggct 52789421  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  52789420 cagtggtgcgtgacttaagtcacgca 52789395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 33985411 - 33985536
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||| ||||||||| |||||| |||||||| |||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| | |||||||    
T  33985411 gtgtaaaaatcaatcaaaaccattgaccaccgtccaagaaacgtttgtgcttcagtttttactaccggccaacttgcgcaagttaactcgcgcagaggct 33985510  T
Q  122 cagtg--gtgtgacttaagtcacgca 145  Q
      |||  | |||||||||||||||||    
T  33985511 ttgtgttgcgtgacttaagtcacgca 33985536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 47020189 - 47020065
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||||||||||||||||||||  |||||| | |||||||||| ||||| |||||||||||||| ||||||| ||| |||||||||| | |||||||    
T  47020189 gtgtaaaaaccaatcaaaagcattgtccaccgttc-agaaacgtttttgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggct 47020091  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  ||||||||| |||||||    
T  47020090 cagtggtgcgtgacttaactcacgca 47020065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 43502248 - 43502372
Alignment:
Q  23 tgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctc 122  Q
    ||||||| |||||||||  ||||||  ||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||||| | | ||||||    
T  43502248 tgtaaaatccaatcaaagccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctc 43502347  T
Q  123 agtggt--gtgacttaagtcacgca 145  Q
    ||||||  | |||||||||||||||    
T  43502348 agtggtgcgcgacttaagtcacgca 43502372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 779418 - 779521
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||  ||||| | |||||||||||||||||||| ||| |||||||| | | |||||||    
T  779418 gtgtaaaaatcaatcaaaagcattgaccaccgtcccaaaaacgttaatgcttcaatttttaccaccggccaacttgcgcaagttaacttgcgaagaggct 779517  T
Q  122 cagt 125  Q
    ||||    
T  779518 cagt 779521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 54808966 - 54809088
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| ||||| |||| ||||||  ||||||| ||||| ||||||| || |||||||||||||||||||||| ||| |||||||||| | | |||||    
T  54808966 gtgtaaaatccaattaaaaccattgactaccgtccaagaaatgtttgtggttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggct 54809065  T
Q  122 cagtggtgt--gacttaagtcac 142  Q
    |||||||||  ||||||||||||    
T  54809066 cagtggtgtgcgacttaagtcac 54809088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 34939320 - 34939425
Alignment:
Q  21 tgtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggc 120  Q
    ||||||||||||||||||||  ||||| |||||| | |||||||||||||||  |||||||||||||||||||||| ||  |||||||||| | | ||||    
T  34939320 tgtgtaaaaaccaatcaaaactattgaccaccgttcaagaaacgtttgtgctgcagtttttaccaccggccaacttgcggaagttaactcgcgcataggc 34939419  T
Q  121 tcagtg 126  Q
    ||||||    
T  34939420 tcagtg 34939425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 51242935 - 51242826
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||| | |||||||| ||||| |||||| ||||||||||||||| ||| |||||||||| | | |||||    
T  51242935 gtgtaaaatccaatcaaaaccattgactaccgtccaaaaaacgtttatgcttcagttttgaccaccggccaacttgcgcaagttaactcgcgcataggct 51242836  T
Q  122 cagtggtgtg 131  Q
    ||||||||||    
T  51242835 cagtggtgtg 51242826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 54703763 - 54703637
Alignment:
Q  21 tgtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggc 120  Q
    ||||||||| |||||||||| |||| |  ||||||| |||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||||   | ||||    
T  54703763 tgtgtaaaatccaatcaaaaccattaactaccgtccaagaaacgtttgttcttcagtttttaccaccgaccaacttgcgcaagttaactcgcacataggc 54703664  T
Q  121 tcagtggt--gtgacttaagtcacgca 145  Q
     |||||||  | |||||||||||||||    
T  54703663 ccagtggtgcgcgacttaagtcacgca 54703637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 36046868 - 36046942
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaactt 96  Q
    |||||||| |||||||||| ||||||  || |||| ||||||||||||| || |||||||||||||| |||||||    
T  36046868 gtgtaaaatccaatcaaaaccattgactactgtccaagaaacgtttgtgtttcagtttttaccaccgaccaactt 36046942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 9242920 - 9243006
Alignment:
Q  60 aaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcagtggt--gtgacttaagtcacgca 145  Q
    |||||||||| ||| |||| | || |||||||||||| || ||||||||||| | | ||||||||||||  |||||||||||||||||    
T  9242920 aaacgtttgttcttcagttctgactaccggccaacttgcgtgagttaactcgcgga-aggctcagtggtgcgtgacttaagtcacgca 9243006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 4616600 - 4616725
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||    
T  4616600 gtgtaaaaagcaatcaaaagcattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggct 4616699  T
Q  122 cagt--ggtgtgacttaagtcacgca 145  Q
    ||||  || |||||||||||||||||    
T  4616700 cagtggggcgtgacttaagtcacgca 4616725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 32737834 - 32737959
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||||||| ||||||||||| |||||||||| ||| |||||||||  | |||||||    
T  32737834 gtgtaaaaaccaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccatcggccaacttgcgcaagttaactcacgcagaggct 32737933  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  32737934 cagtggtgcgtgacttaagtcacgca 32737959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 41192345 - 41192467
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||   | |||||    
T  41192345 gtgtaaaatccaatcaaaaccattgactaccgtccaagaaacgtttgtgctttagtttttaccaccggccaacttgcgcaagttaactcgcacataggct 41192444  T
Q  122 cagtg--gtgtgacttaagtcac 142  Q
    |||||  ||||||||||||||||    
T  41192445 cagtggtgtgtgacttaagtcac 41192467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 5290663 - 5290787
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||||||||||||||||||||| |||||||| |||||||| |||| || |||||||||||||| ||||||| |||||||||||||  | | |||||    
T  5290663 gtgtaaaaaccaatcaaaagcattgaccaccgtcc-agaaacgtctgtgtttcagtttttaccaccgtccaacttgcgcgagttaactcacgcataggct 5290761  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  5290762 cagtggtgcgtgacttaagtcacgca 5290787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 26257738 - 26257863
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||| | ||||| ||| |||||||| | | |||||||    
T  26257738 gtgtaaaaaccaatcaaaagcattgaccaccatcc-agaaacgtttgtgcttcagtttttaccaccgtctaacttgcgcaagttaacttgcgcagaggct 26257836  T
Q  122 cagtg---gtgtgacttaagtcacgca 145  Q
    |||||   |||||||||||||||||||    
T  26257837 cagtggatgtgtgacttaagtcacgca 26257863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 5814497 - 5814600
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||  ||||||||| ||||||  ||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||| |||||    
T  5814497 gtgtaaaattcaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtataggct 5814596  T
Q  122 cagt 125  Q
    ||||    
T  5814597 cagt 5814600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 21083892 - 21083768
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||||||||| |||| ||||||  ||||||| |||||||||||||||| || ||||||||||||||||||| ||| |||||||| | | |||||||    
T  21083892 gtgtaaaaaccaattaaaatcattgactaccgtccaagaaacgtttgtgcttcag-ttttaccaccggccaacttgcgcaagttaacttgcgcagaggct 21083794  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||| ||  |||||||||||||||||    
T  21083793 cagttgtaagtgacttaagtcacgca 21083768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 34619863 - 34619988
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||| |||||||||||||||| |||||||| |||||||||||||  || |||||||||| | | |||||    
T  34619863 gtgtaaaatccaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttatcaccggccaacttgtgcaagttaactcgcgcataggct 34619962  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||| ||  |||||||||||||||||    
T  34619963 cagtagtgcgtgacttaagtcacgca 34619988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 37057323 - 37057199
Alignment:
Q  23 tgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctc 122  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||  | ||||| |   |||||||||| ||| || ||     
T  37057323 tgtaaaaaccaatcaaaagcattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccaactaacttgcataagttaactcgcgtaaagactt 37057224  T
Q  123 agtggt--gtgacttaagtcacgca 145  Q
    ||||||  |||||||||||||||||    
T  37057223 agtggtgcgtgacttaagtcacgca 37057199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 2195130 - 2195236
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||| |||| ||||||||||| |||||||| | |||||||||| ||||||||||||||| |||| ||||| |||||||||||||| ||||| | |    
T  2195130 gtgtaaaaatcaataaaaagcattgaccaccgtccaa-aaacgtttgttctttagtttttaccatcggctaacttgcgcgagttaactcgggtagatgat 2195228  T
Q  122 cagtggtg 129  Q
    ||||||||    
T  2195229 cagtggtg 2195236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 6728743 - 6728636
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| ||||| |||| ||||||  ||||||| |||||||| ||||||| |||||||||||||||||||||| ||| |||||||||| | | |||||    
T  6728743 gtgtaaaatccaattaaaaccattgactaccgtccaagaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggct 6728644  T
Q  122 cagtggtg 129  Q
    ||||||||    
T  6728643 cagtggtg 6728636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 1888043 - 1887918
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||| ||||||||| ||||||  ||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||||||| | | | | |    
T  1888043 gtgtaaaaatcaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgggcaacttgcgcaagttaactcgcgcatatgat 1887944  T
Q  122 cagt--ggtgtgacttaagtcacgca 145  Q
    ||||  || |||||||||||||||||    
T  1887943 cagttgggcgtgacttaagtcacgca 1887918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 39284114 - 39283989
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||| ||| | |||||||| |||||||||    
T  39284114 gtgtaaaagccaatcaaaagcattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaaattaactcgcgtagaggct 39284015  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  39284014 cagtggtgcgtgacttaagtcacgca 39283989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 14678429 - 14678306
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||| ||||||||| |||||| |||||||| |||||||||||||||  |||||||||||||||||||||| ||| |||||||||    |||||||    
T  14678429 gtgtaaaaatcaatcaaaaccattgaccaccgtccaagaaacgtttgtgctgcagtttttaccaccggccaacttgcgcaagttaactcacacagaggct 14678330  T
Q  122 cagtggt--gtgacttaagtcacg 143  Q
    |||||||  |||||||||||||||    
T  14678329 cagtggtgcgtgacttaagtcacg 14678306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 4035114 - 4035239
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||  |||||| ||||||||| |||||||||||||||||||||| ||| |||||||||| | | |||||    
T  4035114 gtgtaaaatccaatcaaaaccattgactaccgtctaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggct 4035213  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  4035214 cagtggtgcgtgacttaagtcacgca 4035239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 37450127 - 37450002
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| ||||| |||| ||||||  ||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||||||||| | |||||    
T  37450127 gtgtaaaatccaattaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgtgcataggct 37450028  T
Q  122 cagtg--gtgtgacttaagtcacgca 145  Q
    |||||  | | |||||||||||||||    
T  37450027 cagtgatgcgcgacttaagtcacgca 37450002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 3742332 - 3742450
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| | |||||||| ||||||  ||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||||  | | |||||    
T  3742332 gtgtaaaatctaatcaaaatcattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcacgcataggct 3742431  T
Q  122 cagtggtgtgacttaagtcac 142  Q
    |||||  ||||||||||||||    
T  3742432 cagtg--gtgacttaagtcac 3742450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 40144746 - 40144869
Alignment:
Q  23 tgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctc 122  Q
    ||||||| |||||||||| ||||||  || || | || ||||||||||||| |||||||||||||||||||||| |||  ||||| |||   | || |||    
T  40144746 tgtaaaatccaatcaaaaccattgactacggttcaaggaacgtttgtgcttcagtttttaccaccggccaacttgcgcaggttaagtcgcacatagactc 40144845  T
Q  123 agtggt--gtgacttaagtcacgc 144  Q
    ||||||  ||||||||||||||||    
T  40144846 agtggtgcgtgacttaagtcacgc 40144869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 33803067 - 33802978
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcc-cagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcg 111  Q
    |||||||||||||| ||||||||||| ||||||||  | |||||||||| ||| |||||| |||||||| |||||| |||| |||||||||    
T  33803067 gtgtaaaaaccaataaaaagcattgaccaccgtccaaaaaaacgtttgttcttcagttttgaccaccgg-caacttgcgcgcgttaactcg 33802978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 8260966 - 8260879
Alignment:
Q  60 aaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcagtggt--gtgacttaagtcacgca 145  Q
    |||||||||| | | |||| | ||||||||||||||| || ||||||||||| | | ||||||||||||  |||||||||||||||||    
T  8260966 aaacgtttgttcatcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctcagtggtgcgtgacttaagtcacgca 8260879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 1217917 - 1217794
Alignment:
Q  21 tgtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggc 120  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||| ||| ||| |||||| | ||||||    
T  1217917 tgtgtaaaaaccaatcaaaagcattgaccaccgtcccagaaacgtttgtgtttcagtttttaccaccggccaacttgcgcaagtcaactcgcgcagaggc 1217818  T
Q  121 tcagtggt--gtgacttaagtcac 142  Q
    || |||||  ||||||||||||||    
T  1217817 tcggtggtgcgtgacttaagtcac 1217794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 4759175 - 4759295
Alignment:
Q  26 aaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcagt 125  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||| ||| |||||||||| | |||||||||||    
T  4759175 aaaaaccaatcaaaagcattgaacaccgtcc-agaaacgtttgtgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggctcagt 4759273  T
Q  126 ggtg--tgacttaagtcacgca 145  Q
    ||||  ||||||||||||||||    
T  4759274 ggtgcatgacttaagtcacgca 4759295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 5913083 - 5913203
Alignment:
Q  27 aaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcagtg 126  Q
    |||| |||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||   ||||||||| ||    
T  5913083 aaaaacaatcaaaagcattggctaccgtcccagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcacagaggctcaatg 5913182  T
Q  127 --gtgtgacttaagtcacgca 145  Q
      |||||||||||||||||||    
T  5913183 gtgtgtgacttaagtcacgca 5913203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 9039789 - 9039665
Alignment:
Q  23 tgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctc 122  Q
    |||||||||||||||||| ||||||  ||| ||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| | ||||| ||    
T  9039789 tgtaaaaaccaatcaaaaccattgactaccatccaagaaacgtttgtgctgtagtttttaccaccggccaacttgcgcaagttaactcgcgcagaggttc 9039690  T
Q  123 agtgg--tgtgacttaagtcacgca 145  Q
    |||||  ||||||||||||||||||    
T  9039689 agtggtgtgtgacttaagtcacgca 9039665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 42182780 - 42182662
Alignment:
Q  27 aaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcagtg 126  Q
    ||||||||||||||||||||| |||  ||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||| |||||||    
T  42182780 aaaaccaatcaaaagcattgaccactatcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagagactcagtg 42182681  T
Q  127 gt--gtgacttaagtcacg 143  Q
    ||  |||||||| ||||||    
T  42182680 gtgcgtgacttaggtcacg 42182662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 2766825 - 2766952
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||||||||| ||||||||||| |||||||| | |||||||||| ||| |||||| ||||| ||||||||| || | ||||||||||| ||||| |    
T  2766825 gtgtaaaaaccaataaaaagcattgaccaccgtccaaaaaacgtttgttcttcagttttgaccactggccaacttgcgtgcgttaactcgtgcagaggtt 2766924  T
Q  122 cagtgg--tgtgacttaagtcacgcatg 147  Q
    ||||||  ||||||| || |||||||||    
T  2766925 cagtggtttgtgactaaactcacgcatg 2766952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 35161730 - 35161624
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||  |||||||||||||||| || |||||||||||| |||||| ||| |||||||||| | | |||||    
T  35161730 gtgtaaaatccaatcaaaatcattgactaccgtctaagaaacgtttgtgcttcag-ttttaccaccggtcaacttgcgcaagttaactcgcgcataggct 35161632  T
Q  122 cagtggtg 129  Q
    ||||||||    
T  35161631 cagtggtg 35161624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 15739669 - 15739755
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaac 108  Q
    |||||||| ||||| |||| |||||   ||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  15739669 gtgtaaaatccaattaaaaccattgcctaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaac 15739755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 23810819 - 23810906
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactc 110  Q
    ||||||||| |||||||||| ||||| ||| ||||| ||||||||||||||| || ||||||||||| ||||||| ||| |||||||||    
T  23810819 gtgtaaaaatcaatcaaaagaattgaccacggtccctgaaacgtttgtgcttcag-ttttaccaccgtccaacttgcgcaagttaactc 23810906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 4322821 - 4322714
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| |||||   | || || |||||| ||||||||| ||||||||||||||| |||||| ||| |||||||||| | | |||||    
T  4322821 gtgtaaaatccaatcaaaatcattggctatcgcccaagaaacatttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggct 4322722  T
Q  122 cagtggtg 129  Q
    ||||||||    
T  4322721 cagtggtg 4322714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 30634077 - 30634200
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||| |||||||||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||  |||||||||    
T  30634077 gtgtaaaaatcaatcaaaagcattggccaccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcacgtagaggct 30634176  T
Q  122 cagtggt--gtgacttaagtcacg 143  Q
    |||||||  |||||||||||||||    
T  30634177 cagtggtgcgtgacttaagtcacg 30634200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 3515180 - 3515305
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||||||||||||||  ||||| |||||||| | |||||||||||||  |||||||||||||||||||||| ||| |||||||||| |||||||||    
T  3515180 gtgtaaaaaccaatcaaaactattgaccaccgtccgaaaaacgtttgtgctacagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggct 3515279  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  3515280 cagtggtgcgtgacttaagtcacgca 3515305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 11599130 - 11599019
Alignment:
Q  36 caaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcagtggtg--tgac 133  Q
    ||||| ||||||  ||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||||| | | |||||| ||||||  ||||    
T  11599130 caaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcggtggtgcatgac 11599031  T
Q  134 ttaagtcacgca 145  Q
    ||||||||||||    
T  11599030 ttaagtcacgca 11599019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 33686506 - 33686631
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||| |||||| ||||||||| |||||||||||||||||||||||||| |||||||||| | | |||||    
T  33686506 gtgtaaaatccaatcaaaaccattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttacgcaagttaactcgcgcataggct 33686605  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  33686606 cagtggtgcgtgacttaagtcacgca 33686631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 49150669 - 49150562
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||| || ||| ||| ||| || | |||||||    
T  49150669 gtgtaaaaatcaatcaaaagcattggccaccgtcccagaaacgtttatgcttaagtttttaccaccggccaatttgcgcaagtcaacgcgcgcagaggct 49150570  T
Q  122 cagtggtg 129  Q
    ||||||||    
T  49150569 cagtggtg 49150562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 7014736 - 7014859
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||  ||||||||| ||||||  ||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||||| | | | |||    
T  7014736 gtgtaaaattcaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcatatgct 7014835  T
Q  122 cagtggt--gtgacttaagtcacg 143  Q
     ||||||  |||||||||||||||    
T  7014836 tagtggtgcgtgacttaagtcacg 7014859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 22605563 - 22605440
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||| ||||||| ||||||| ||| |||||||| | |||||| | | ||| |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  22605563 gtgtaagaaccaataaaaagcaatgaccaccgtccaaaaaacgtatattcttcagtttttaccaccggctaacttgcgcaagttaactcgtgtagaggct 22605464  T
Q  122 cagtggt--gtgacttaagtcacg 143  Q
    || ||||  |||||||||||||||    
T  22605463 caatggtgcgtgacttaagtcacg 22605440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 15399194 - 15399069
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||||| | |||||||||||  ||||||| ||  |||||||||| | |||| ||    
T  15399194 gtgtaaaaaccaatcaaaagcattgacaaccgtcccataaacgtttgtgcttcaatttttaccaccatccaacttgcgtaagttaactcgcgcagagact 15399095  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    | |||||  ||||||||| |||||||    
T  15399094 cggtggtgcgtgacttaactcacgca 15399069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 30858621 - 30858499
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| ||||| ||||||||||| || ||||  | |||||||||| ||| || ||| ||||||||||||||| |||||||||||||| |||||||||    
T  30858621 gtgtaaaacccaataaaaagcattgaccatcgtctaaaaaacgtttgttcttcagctttgaccaccggccaacttgcgcgagttaactcgcgtagaggct 30858522  T
Q  122 cagtgg--tgtgacttaagtcac 142  Q
    || |||  | |||||||||||||    
T  30858521 caatggtttatgacttaagtcac 30858499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 1671290 - 1671408
Alignment:
Q  23 tgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctc 122  Q
    |||||||| |||| ||||||||||| |||||||| | |||||||||| ||| |||||| ||||||| ||||||| || | ||||||||| | ||||||||    
T  1671290 tgtaaaaatcaataaaaagcattgaccaccgtccaa-aaacgtttgttcttcagttttgaccaccgaccaacttgcgtgcgttaactcgcgcagaggctc 1671388  T
Q  123 agtggt--gtgacttaagtc 140  Q
    ||||||  ||||||||||||    
T  1671389 agtggttcgtgacttaagtc 1671408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 43138610 - 43138718
Alignment:
Q  21 tgtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggc 120  Q
    ||||||||| |||||  ||| ||||||  ||||||| |||||||||||||||| |||||||| |||||||||| || ||| |||||||||| | | ||||    
T  43138610 tgtgtaaaatccaatttaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttatcaccggccaatttgcgcaagttaactcgcgcataggc 43138709  T
Q  121 tcagtggtg 129  Q
    |||||||||    
T  43138710 tcagtggtg 43138718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 12926952 - 12926827
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||  ||||||||| |||| |  || |||| |||||||||||||||| |||||||||||   |||||||| ||| |||||||||| | | |||||    
T  12926952 gtgtaaaattcaatcaaaaccattaactactgtccaagaaacgtttgtgcttcagtttttaccattagccaacttgcgcaagttaactcgcgcataggct 12926853  T
Q  122 cagtggtg--tgacttaagtcacgca 145  Q
    ||||||||  ||||||||||| ||||    
T  12926852 cagtggtgcatgacttaagtcgcgca 12926827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 10308597 - 10308509
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactc 110  Q
    |||||||  |||||||||| ||||||  |||||   ||||| |||||||||| ||| |||||||||||||||||| ||| |||||||||    
T  10308597 gtgtaaagtccaatcaaaatcattgactaccgttagagaaatgtttgtgcttcagtgtttaccaccggccaacttgcgcaagttaactc 10308509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 41871829 - 41871767
Alignment:
Q  49 caccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcg 111  Q
    |||||||| | |||||||||| ||| |||| ||||||||||||||| | || |||||||||||    
T  41871829 caccgtccaaaaaacgtttgttcttcagttcttaccaccggccaacgtgcgtgagttaactcg 41871767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 20218 - 20093
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||| |||||||||||||||| | |||||||||||||||||||| ||| |||||||||| | | |||||    
T  20218 gtgtaaaatccaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcaatttttaccaccggccaacttgcgcaagttaactcgcgcataggct 20119  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  20118 cagtggtgcgtgacttaagtcacgca 20093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 1081850 - 1081975
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||||||| | | |||||    
T  1081850 gtgtaaaatccaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggct 1081949  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  1081950 cagtggtgcgtgacttaagtcacgca 1081975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 18172097 - 18172222
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||||| |||||||||||||||| |||||||||||||| ||||||| ||| |||||||||| | | | |||    
T  18172097 gtgtaaaatccaatcaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataagct 18172196  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  18172197 cagtggtgcgtgacttaagtcacgca 18172222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 43147388 - 43147513
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||||||||| ||||| ||||| || ||| | | |||  |||||  || |||||||||||||||||||||| ||||||||||||||||||||||||    
T  43147388 gtgtaaaaaccaatgaaaagaattgaccatcgttcaaaaaatatttgtttttcagtttttaccaccggccaacttgcgcgagttaactcgtgtagaggct 43147487  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  43147488 cagtggtgcgtgacttaagtcacgca 43147513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 7662166 - 7662291
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||| ||||||  ||||| | |||||||||||||||| |||||||||||||||||||||| ||| |||||| ||| | | |||||    
T  7662166 gtgtaaaatccaatcaaaaccattgactaccgttcaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaaatcgcgcataggct 7662265  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  ||||||||| |||||||    
T  7662266 cagtggtgcgtgacttaactcacgca 7662291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 12144171 - 12144046
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| |||||||||  ||||||  ||||||| |||||||||||||||| |||||||| ||| | ||||||| ||| |||||||||||| | |||||    
T  12144171 gtgtaaaatccaatcaaacccattgactaccgtccaagaaacgtttgtgcttcagtttttaacactgaccaacttgcgcaagttaactcgtgcataggct 12144072  T
Q  122 cagtggt--gtgacttaagtcacgca 145  Q
    |||||||  |||||||||||||||||    
T  12144071 cagtggtgcgtgacttaagtcacgca 12144046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 40033968 - 40034089
Alignment:
Q  27 aaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttt-taccaccggccaacttacgcgagttaactcgtgtagaggctcagt 125  Q
    ||||||||| ||||||||||| |||||||| | |||| ||||| ||| |||||| |||||||| ||||||| |||||||||||||| |||||||||||||    
T  40033968 aaaaccaataaaaagcattgaccaccgtccaaaaaacatttgttcttcagttttttaccaccgaccaacttgcgcgagttaactcgcgtagaggctcagt 40034067  T
Q  126 ggt--gtgacttaagtcacgca 145  Q
    |||  |||||||||||| ||||    
T  40034068 ggtgcgtgacttaagtctcgca 40034089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 34954173 - 34954047
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    |||||||| ||||| |||| ||||||  ||||||| |||||||||||||||| ||||||||||||| ||||||||  || |||||||||| | | |||||    
T  34954173 gtgtaaaatccaattaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccagccaacttgtgcaagttaactcgcgcataggct 34954074  T
Q  122 cagtggtg--tgacttaagtcacgcat 146  Q
    ||||||||   ||||||||||||||||    
T  34954073 cagtggtgcacgacttaagtcacgcat 34954047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 2786857 - 2786732
Alignment:
Q  22 gtgtaaaaaccaatcaaaagcattgatcaccgtcccagaaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggct 121  Q
    ||||||||  ||||||||| ||||||  ||||||| | |||  ||||||||| |||||||||||||||||||||| ||| |||||||||| | | |||||    
T  2786857 gtgtaaaattcaatcaaaatcattgactaccgtccaaaaaatatttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggct 2786758  T
Q  122 cagtggtg--tgacttaagtcacgca 145  Q
    ||||||||  ||||||||||||||||    
T  2786757 cagtggtgcatgacttaagtcacgca 2786732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 4085 - 3998
Alignment:
Q  60 aaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcagtggt--gtgacttaagtcacgca 145  Q
    |||||||||| ||| |||| | |||||||| |||||| || ||||||||||| | | ||||||||||||  |||||||||||||||||    
T  4085 aaacgtttgttcttcagttctgaccaccggtcaacttgcgtgagttaactcgcggaaaggctcagtggtgcgtgacttaagtcacgca 3998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 25685 - 25597
Alignment:
Q  60 aaacgtttgtgctttagtttttaccaccggccaacttacgcgagttaactcgtgtagaggctcagtggt--gtgacttaagtcacgcat 146  Q
    |||||||||| ||| |||| | ||||||||||||||| || ||||||||||| | | |||||  |||||  ||| ||||||||||||||    
T  25685 aaacgtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctgggtggtacgtgccttaagtcacgcat 25597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University