View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15927_high_35 (Length: 354)
Name: NF15927_high_35
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 46161703 - 46162019
Alignment:
| Q |
7 |
tcgaagaatatttagttcccatgtatatcatgattatgcaaagtttggccattttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattc |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46161703 |
tcgaataatatttagttcccatgtatatcatgattatgcaaagtttggccattttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattc |
46161802 |
T |
|
| Q |
107 |
gttacgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccacatataatcatt |
206 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46161803 |
gtt-cgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccacatat---catt |
46161898 |
T |
|
| Q |
207 |
tattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatataattatcttcttcggctgtcaactggggtgggaacaaatggcga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46161899 |
tattttcttgtcaaactttttctcttaacaataaacatcttcccagaacaatatataattatcttcttcagctgtcaactggggtgggaacaaatggcga |
46161998 |
T |
|
| Q |
307 |
agcctactttttgttcaatat |
327 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46161999 |
agcctactttttgttcaatat |
46162019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 263
Target Start/End: Original strand, 46169121 - 46169285
Alignment:
| Q |
96 |
cagtgctattcgttacgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccac |
195 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |
|
|
| T |
46169121 |
cagtgctatttgttacgaaagatctatacaagaaataaagagaagaatgcataataataagagat-ttgactaatcaaattctatgttacatgctgctac |
46169219 |
T |
|
| Q |
196 |
atataatcatttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatata |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
46169220 |
atataatcatttattttcttgtcaaactttt--tcttaacgataaacattttcccagaacaatatata |
46169285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 46245279 - 46245224
Alignment:
| Q |
282 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataa |
337 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
46245279 |
caactggggtgggaacaaatggtgaagcctacgttttgttcaatatgggaacataa |
46245224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 46254967 - 46254913
Alignment:
| Q |
282 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacata |
336 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
46254967 |
caactgggttgggaacatttggtgaagcctactatttgttcaatatgggaacata |
46254913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University