View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_4 (Length: 593)
Name: NF15927_high_4
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 37358067 - 37357492
Alignment:
| Q |
1 |
catttcttcaaaataaacattttgcaagattcaaatccaaaaagtcgtggttaccaacaatagagcgcagtttcatataggaaatttggagaatacctcg |
100 |
Q |
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| T |
37358067 |
catttcttcaaaataaacattttgcaagattcaaatccaaaaagtcgtggttaccaacaatagagcgcagtttcatataggaaatttggagaatacctcg |
37357968 |
T |
|
| Q |
101 |
aagagttaaagtaagaaagctgctcacttcaattgagcatgccaaaatgaatggtcaagcagaagcagtaaatcatgtttctttcgatgattaaagagaa |
200 |
Q |
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| T |
37357967 |
aagagttaaagtaagaaagctgttcacttcaatggagcatgccaaaatgaatggtcaatcagaagcagtaaatcatgtttctttcgatgattaaagagaa |
37357868 |
T |
|
| Q |
201 |
gactcgattaagccaaaggaaattgggccgacaaactgtatccaatactgcaagaacatatccactccacattcgaccaaaggagaatcaccatatcgct |
300 |
Q |
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| T |
37357867 |
gactcgattaagccaaaggaaattgggtcgacaaactgtatccaatactgcaagaacatatccactccacattcgaccaaatgagaatcaccatatcgct |
37357768 |
T |
|
| Q |
301 |
ttacatatggaacctaatcagtcatccttgtcgaaataggggaagtcaattggagaacaacacacctactaggtctcgaagataaaaaataattcctaag |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37357767 |
ttacatatggaaccaaatcagtcatccttgtcgaaataggggaagtcaattggagaacaacacacctactaagtctcgaagataaaaaataattcctaag |
37357668 |
T |
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| Q |
401 |
ggaagagcttgattttctagacaaaaattgtagtaatgccgccctgagggaagccattatcaaacaaggaactgcaaaagatacagcaatggcgttaacc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37357667 |
ggaagagcttgattttctagacaaaaattgtagtaatgccgacctgagggaagccattatcaaacaaggaactgcaaaagatacaacaatggcgttaacc |
37357568 |
T |
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| Q |
501 |
aaagataattttaagaggatgatcaaacactcataagtagtcataaaacacataggggaagatcacaccttattgg |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37357567 |
aaagataattttaagaggatgatcaaacactcataagtagtcataaaacacataggggaagatcacaccttattgg |
37357492 |
T |
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