View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_43 (Length: 309)
Name: NF15927_high_43
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 16871434 - 16871256
Alignment:
| Q |
18 |
agttcaaactaaaaagaatcatcctaagaaacagtcaaatgcatgaataaga--tgctgtgttgttttgaagaacatccagatgatgaagcttgagaaag |
115 |
Q |
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| T |
16871434 |
agttcaaactaaaaagaatcatcctaagaaacagtcaaatgcattaataagagatgctgtgttgttttgaagaacatccagatgatgatgcttgagaaag |
16871335 |
T |
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| Q |
116 |
atgtccatgagtctacaatttcttctgctacatcaaaataattggatttaggtacaaatcactaacttcctattaatta |
194 |
Q |
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| T |
16871334 |
atgtccatgagtctacaatttcttctgctacatcaaaataattggatttaggtacaaatcactaacttcctattaatta |
16871256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 16654942 - 16655064
Alignment:
| Q |
78 |
tgttttgaagaacatccagatgatgaagcttgagaaagatgtccatgagtctacaatttcttctgctacatcaaaataattggatttaggtacaaatcac |
177 |
Q |
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| T |
16654942 |
tgttgtgaagaacatccagatgatgaagcttgagaaagatgtccatgagtctacaatttcttctgctacatcaaaataattggatttaggtacaaatcac |
16655041 |
T |
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| Q |
178 |
taacttcctattaattaaacaac |
200 |
Q |
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| T |
16655042 |
taacttccatttaattaaacaac |
16655064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 16871206 - 16871167
Alignment:
| Q |
234 |
tataaaatacagtaaaaggaaatgaaactatgtctatcat |
273 |
Q |
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| T |
16871206 |
tataaaatacagtaaaaggaaatgaaactatgtcgatcat |
16871167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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