View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_46 (Length: 306)
Name: NF15927_high_46
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 23873269 - 23873539
Alignment:
| Q |
20 |
aattagtaagatgaaaattttgttatcattttaagctttttgaaaaatagtaaaataacagcaaataggactcacagtcacttgttcatggaggaatttg |
119 |
Q |
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| T |
23873269 |
aattagtaagatgaaaattttgttaacattataagcttttcggaaaatagtaaaataataggaaacgggacttacagtcacttgttcatggagaaacttg |
23873368 |
T |
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| Q |
120 |
atatattcaattgcttcagagagcactgaggctgtatcagtctgactcatcatagcaaacagattttaaattaaaattcaataaacaacattagaaaata |
219 |
Q |
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| T |
23873369 |
atatattcaattgcttcagagagcactgaggctgtatcagtctgactcaacatagcaaacagattttaaattaaaattcaataaacaacattagaaaata |
23873468 |
T |
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| Q |
220 |
atatcatagtttaaaattgcaatctggaaccacatatacagctttaatataaaggttttagaagtttctgc |
290 |
Q |
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| T |
23873469 |
atatcatagtttaaaattgcaatctggaaccacatatgcagctttaatataaaggttttagaagtttctgc |
23873539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 34348877 - 34348956
Alignment:
| Q |
86 |
aggactcacagtcacttgttcatggaggaatttgatatattcaattgcttcagagagcactgaggctgtatcagtctgac |
165 |
Q |
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| T |
34348877 |
aggacttacagtaacctgttcatggagaaatttaatatattcaatggcttcagaaagcactgaggctgtatcagtctgac |
34348956 |
T |
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