View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_47 (Length: 304)
Name: NF15927_high_47
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 26099510 - 26099226
Alignment:
| Q |
8 |
gaatgataatcaagtttatattgtgtacatgggaggtacggattcaactaatggtacccttcgtaaagatcatgatcatgttttaaacatggtgttaaga |
107 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099510 |
gaatgaaaatcaagtttatattgtgtacatgggaggtgtggattcaactaatggttcccttcgtaaagatcatgatcatgttttaaacatggtgttaaga |
26099411 |
T |
|
| Q |
108 |
aggtaattaattaattaacactaattacacaaacacaaacacaaatatcatgatattcaattattgatgtgaatggtttaggaatgaaaaagctctagta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099410 |
aggtaattaattaattaacactaattacacaaacacaaacacaaatatcatgatattcaattattgatgtgaatggtttaggaatgaaaaagctctagta |
26099311 |
T |
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| Q |
208 |
cacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaattgctcaacaacctggagttg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099310 |
cacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaattgctcaacaacctggagttg |
26099226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 53434401 - 53434286
Alignment:
| Q |
177 |
tgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaattgct |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| ||||| | ||||| |
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| T |
53434401 |
tgaatggtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagtaaatttagttgct |
53434302 |
T |
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| Q |
277 |
caacaacctggagttg |
292 |
Q |
| |
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|||||||||||||||| |
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| T |
53434301 |
caacaacctggagttg |
53434286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 48370830 - 48370951
Alignment:
| Q |
171 |
ttgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattca |
270 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
48370830 |
ttgatgtgaattgtttaggaatgaaaaagctctagtacataactataagcacggattctcaggcttcgcagctcgtttatcgaaaaatgaagcagcctca |
48370929 |
T |
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| Q |
271 |
attgctcaacaacctggagttg |
292 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
48370930 |
attgctcaacaacctggagttg |
48370951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 53426245 - 53426125
Alignment:
| Q |
172 |
tgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaa |
271 |
Q |
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|
|||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||| ||||||||| |||| |
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| T |
53426245 |
tgatgtgaatcatttaggaatgagaaagctctagtacataactacaaacacggattctcaggctttgcggctcgtttatcaaaaagtgaagcaaactcaa |
53426146 |
T |
|
| Q |
272 |
ttgctcaacaacctggagttg |
292 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
53426145 |
ttgctcaacaacctggagttg |
53426125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 53434581 - 53434471
Alignment:
| Q |
8 |
gaatgataatcaagtttatattgtgtacatgggaggtacggattcaactaatggtacccttcgtaaagatcatgatcatgttttaaacatggtgttaaga |
107 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||| || ||||||||| |
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| T |
53434581 |
gaatgaaaatcaaatttatattgtgtatatgggagctacggattcaatagatggttcccttcgtaaagatcatgcctatgttttaagcacagtgttaaga |
53434482 |
T |
|
| Q |
108 |
aggtaattaat |
118 |
Q |
| |
|
||||||||||| |
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| T |
53434481 |
aggtaattaat |
53434471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 53321943 - 53321823
Alignment:
| Q |
172 |
tgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaa |
271 |
Q |
| |
|
|||||||||| |||||||| || | ||| || |||||||||||||| | ||||||||||| || ||||||| | |||||||| |||||||||| |||| |
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| T |
53321943 |
tgatgtgaattatttaggaacgagagggctttaatacacaactacaaacatggattctcaggttttgcagctcttctatcaaaacatgaagcaaactcaa |
53321844 |
T |
|
| Q |
272 |
ttgctcaacaacctggagttg |
292 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
53321843 |
tagctcaacaacctggagttg |
53321823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 53426421 - 53426306
Alignment:
| Q |
8 |
gaatgataatcaagtttatattgtgtacatgggaggtacggattcaactaatggtacccttcgtaaagatcatgatcatgttttaaacatggtgttaaga |
107 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| | | |||||||||||||| ||||||| ||||||||| ||| ||||||||| ||||||| | |
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| T |
53426421 |
gaatgacaatcaagtttatattgtgtatatgggagcttcacattcaactaatggttcccttcgcgaagatcatgcccatattttaaacacagtgttaaaa |
53426322 |
T |
|
| Q |
108 |
aggtaattaattaatt |
123 |
Q |
| |
|
||||| |||||||||| |
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| T |
53426321 |
aggtacttaattaatt |
53426306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 53311184 - 53311063
Alignment:
| Q |
8 |
gaatgataatcaagtttatattgtgtacatgggaggtacggattcaactaatggtacccttcgtaaagatcat-gat---catgttttaaacatggtgtt |
103 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| | | |||||||||||| ||||||||| ||| ||||| || ||||||||||||| |||||| |
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| T |
53311184 |
gaatgacaaacaagtttatattgtgtacatgggagctgcagattcaactaatagtacccttccaaaatatcatatatatccatgttttaaacacggtgtt |
53311085 |
T |
|
| Q |
104 |
aagaaggtaattaattaattaa |
125 |
Q |
| |
|
|||||| ||| ||| ||||||| |
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| T |
53311084 |
aagaagttaactaactaattaa |
53311063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 53310978 - 53310932
Alignment:
| Q |
187 |
aggaatgaaaaagctctagtacacaactacaaatacggattctcagg |
233 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| ||||||||||||| |
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| T |
53310978 |
aggaatgaaaaggctctcgtacacaattacaaacacggattctcagg |
53310932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 53310931 - 53310886
Alignment:
| Q |
247 |
ttatcaaaaaatgaagcaaattcaattgctcaacaacctggagttg |
292 |
Q |
| |
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|||| ||||||||||||||| ||||||||||| |||| |||||||| |
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| T |
53310931 |
ttattaaaaaatgaagcaaactcaattgctcatcaacatggagttg |
53310886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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