View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15927_high_49 (Length: 295)
Name: NF15927_high_49
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 279
Target Start/End: Complemental strand, 43466382 - 43466116
Alignment:
| Q |
6 |
aggagcacagaaaaacatgcaaaacaaaatagataccaaagtccaaaccaatctctacaaccaacttctggaccttggaaaaaagacaaagatagccacc |
105 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43466382 |
aggaccacacaaaaacatgcaaaacaaaatacatacgaaa-------ccaatctctacaaccaacttctggaccttggaaaaaagacaaagatagccacc |
43466290 |
T |
|
| Q |
106 |
acatcccgtggagacaaactccaacataaccacctaaaacgactacatggaagcaccacaaaatgcacaagaggtgccactaggatcagtaatcacttta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43466289 |
acatcccgtggagacaaactccaacataaccacctaaaacgactacatggaagcaccacaaattgcacaagaggtgccactaggatcagtaatcacttta |
43466190 |
T |
|
| Q |
206 |
cgcttaagtaggttatgcagaattaccaaccttaaaaggtgacaataattcaacatcatgaaaagaatactagc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43466189 |
cgcttaagtaggttatgcagaattaccaaccttaaaaggtgacaataattcaacatcatgaaaagaacactagc |
43466116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University