View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_53 (Length: 277)
Name: NF15927_high_53
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 28206120 - 28205883
Alignment:
| Q |
12 |
aagaatatggactgtataaattaagattagctcttgcaagtgcaaatgtctctgaattacaggtaaggaacttcatcaaaaactttgaattagttttcca |
111 |
Q |
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| T |
28206120 |
aagaaaatggactgtataaattaagattagctcttgcaagtgcaaatgtctctgaattacaggtaaggaacttcatcaaaaactttctattagttttcca |
28206021 |
T |
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| Q |
112 |
atgtaatcatcaaatttgttaagaagaaaatggtatataaactagtttacactaacatcaaaaataaaaattcaatattttacaattacttttaaaatac |
211 |
Q |
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| T |
28206020 |
atgtaatcatcaaatttgttaagaagaaaatggtatataaactagtttacactaacatcaaaaataaaaattcaatattttacgattacttctaaaatac |
28205921 |
T |
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| Q |
212 |
ggttataagataagtttatacgaacccacttgagttga |
249 |
Q |
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| T |
28205920 |
ggttataagataagtttatacgaacccacttaagttga |
28205883 |
T |
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