View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_54 (Length: 274)
Name: NF15927_high_54
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 46451025 - 46451272
Alignment:
| Q |
17 |
atacctaccaaccttaaccatctaaatctaaggtgtagtgaagttaaagagttctaagtgttttgttttacaaagctatcctatcctcaaaaacacactt |
116 |
Q |
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| T |
46451025 |
atacctaccaaccttaaccatctaaatctaaggtgtagtgaagttaaacagttctaagtgttttgttttacaaagctatcctatcctcaaaaacacactt |
46451124 |
T |
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| Q |
117 |
ttgttgttgtaacattaagaacttgttatcaatggctgtttcatcttatcaatctatcatgtctagctccattaccagcaccatttctagcaggcctaga |
216 |
Q |
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| T |
46451125 |
t-gttgttgtaacattaagaacttgttatcaatggctgtttcatcttatcaatctatcatgtctagctccattaccagcaccatttctagcaggcctaga |
46451223 |
T |
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| Q |
217 |
gttaaccaatttaacaacatcccttctgtgtatatgcctagcttcagaa |
265 |
Q |
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| T |
46451224 |
gttaaccaatttaacaacatcccttctgtgtatatgcctagcttcagaa |
46451272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 46345644 - 46345396
Alignment:
| Q |
17 |
atacctaccaa-ccttaaccatctaaatctaaggtgtagtgaagttaaagagttctaagtgttttgttttacaaagctatcctatcctcaaaaacacact |
115 |
Q |
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| T |
46345644 |
atacctaccaaaccttaaccatctaaatctaaggtgcagtgaagttaaagagttctaagtgttttgttttacaaagctatcctatcctcaaaaacacact |
46345545 |
T |
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| Q |
116 |
tttgttgttgtaacattaagaacttgttatcaatggctgtttcatcttatcaatctatcatgtctagctccattaccagcaccatttctagcaggcctag |
215 |
Q |
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| T |
46345544 |
tt-gttgttgtaacattaagaacttgttatcaatggctgtttcatcttatcaatctatcatgtctagctccattactagcatcatttctagcaggcctag |
46345446 |
T |
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| Q |
216 |
agttaaccaatttaacaacatcccttctgtgtatatgcctagcttcagaa |
265 |
Q |
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| T |
46345445 |
agttaaccaatttaacaacatcccttctgtgtatatgcctagcttcagaa |
46345396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 46470680 - 46470817
Alignment:
| Q |
123 |
ttgtaacattaagaacttgttatcaatggctgtttcatcttatcaatctatcatgtctagctccattaccagcaccatttctagcaggcctagagttaac |
222 |
Q |
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| T |
46470680 |
ttgtaacattaagaacttgttatcaatggctgtttcatcttatcaatctatcatgtctagctccattacaagcagcatttctagcaggcctagagttaac |
46470779 |
T |
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| Q |
223 |
caatttaacaacatcccttctgtgtatatgcctagctt |
260 |
Q |
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| T |
46470780 |
caatttaacaacatcccttctgtgtatatgcctagctt |
46470817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 46462097 - 46462217
Alignment:
| Q |
142 |
ttatcaatggctgtttcatcttatcaatctatcatgtctagctccattaccagcaccatttctagcaggcctagagttaaccaatttaacaacatccctt |
241 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||||| || |||| |||||||||||||| |||||||||||||| | | |||||||||| |
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| T |
46462097 |
ttatcaatggctgtatcatcttaccaatctatcatgtcaagctcaatgacca---ccatttctagcaggtctagagttaaccaaatcagtaacatccctt |
46462193 |
T |
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| Q |
242 |
ctgtgtatatgcctagcttcagaa |
265 |
Q |
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| T |
46462194 |
ctgtgtacatgcctagctttagaa |
46462217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 46465514 - 46465624
Alignment:
| Q |
143 |
tatcaatggctgtttcatcttatcaatctatcatgtctagctccattaccagcaccatttctagcaggcctagagttaaccaatttaacaacatcccttc |
242 |
Q |
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| T |
46465514 |
tatcaatggctgtatcatcttatcaatctatcatgtcaagctccatgaccagca------------ggcctagagttacccgacttaacaacatcccttc |
46465601 |
T |
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| Q |
243 |
tgtgtatatgcctagcttcagaa |
265 |
Q |
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| T |
46465602 |
tgtgtatatgcctagcttcagaa |
46465624 |
T |
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