View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15927_high_55 (Length: 270)
Name: NF15927_high_55
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 35502485 - 35502671
Alignment:
| Q |
1 |
atgaatatggaagaaaaataaaatatacgtacctttctgcatggaattgaactaagaaatattttccatgtcctttcctcttgaattgctactgcaacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35502485 |
atgaatatggaagaaaaataaaatatacgtacctttctgcatggaattgaactaagaaatattttccatgtcctttcctcttgaattgctactgcaacgt |
35502584 |
T |
|
| Q |
101 |
ttgatcgctctagatgtcttccttttctctcgattttttattacaagatttaactaggattccaatgtagagccactaaattccttg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
35502585 |
ttgatcgctctagatgtcttccttttctctcgattttttattacaagatttaactagtactccaatgtagagccactaaattccttg |
35502671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University