View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_58 (Length: 251)
Name: NF15927_high_58
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 37320981 - 37320766
Alignment:
| Q |
23 |
ttcattcacatcaaccatggcaaaattctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccactgccact |
122 |
Q |
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| T |
37320981 |
ttcattcacatcaaccatggcaaaattctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccactgccact |
37320882 |
T |
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| Q |
123 |
aattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320881 |
aattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaac |
37320782 |
T |
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| Q |
223 |
ctagcatggtatttgt |
238 |
Q |
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|||||||||||||||| |
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| T |
37320781 |
ctagcatggtatttgt |
37320766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 37317405 - 37317187
Alignment:
| Q |
23 |
ttcattcacatcaaccatggcaaaattctcatcatgttccacaa---ttctcatttctttgaaccttactttcgtctccataatatcccttgccactgcc |
119 |
Q |
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||||||| |||||||||||||||||| |||| ||| |||| || |||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
37317405 |
ttcattcgcatcaaccatggcaaaatcctcaacattctccataactcttctaatttctttgaaccttactttcctctctataatatcccttgccactgcc |
37317306 |
T |
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| Q |
120 |
actaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaa |
219 |
Q |
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| T |
37317305 |
actaattactatcaaaacctatccccaacaatgttgggttttcaagaagagaaattcactcaccttcacttttactttcacgacatcgtgtcaggaccaa |
37317206 |
T |
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| Q |
220 |
aacctagcatggtatttgt |
238 |
Q |
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| T |
37317205 |
aacctagcatggtatttgt |
37317187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 37324918 - 37324749
Alignment:
| Q |
67 |
ttctcatttctttgaaccttactttcgtctccataatatcccttgccactgccactaattactataaaagcctatccccaacaatgctgggttttcaaga |
166 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
37324918 |
ttctaatttctttgaaccttactttcctctccataatatcccttaccacggccactaattactatcaaagcctatctccaacaatgctgggttttcaaga |
37324819 |
T |
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| Q |
167 |
agagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaacctagcatggtattt |
236 |
Q |
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| T |
37324818 |
agagaaattcactcaccttcacttttactttcatgacattgtgtcgggaccaaaaccaagcatggtattt |
37324749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 37306978 - 37306893
Alignment:
| Q |
102 |
atatcccttgccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttca |
187 |
Q |
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|||||||| || || ||||| |||||||| |||||| |||| ||| | || ||||||||||||||||||||||||| |||||||| |
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| T |
37306978 |
atatccctggctacagccaccaattactacaaaagcttatctccagctttgttgggttttcaagaagagaaattcacccaccttca |
37306893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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