View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15927_high_6 (Length: 587)

Name: NF15927_high_6
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15927_high_6
NF15927_high_6
[»] chr3 (3 HSPs)
chr3 (15-477)||(2505786-2506249)
chr3 (427-472)||(9507380-9507425)
chr3 (427-472)||(9515355-9515400)
[»] chr4 (1 HSPs)
chr4 (190-262)||(8681912-8681984)
[»] chr5 (1 HSPs)
chr5 (189-264)||(30916398-30916473)
[»] chr8 (2 HSPs)
chr8 (202-260)||(7361274-7361332)
chr8 (190-264)||(7362022-7362091)
[»] scaffold2125 (1 HSPs)
scaffold2125 (425-477)||(999-1051)


Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Original strand, 2505786 - 2506249
Alignment:
Q  15 tcactaaagagtagaccgacgttcttggtctttatattattagacattcctactaaataagctatatatcttcaactttgtgtggttcttattcttaatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2505786 tcactaaagagtagaccgacgttcttggtctttatattattagacattcctactaaataagctatatatcttcaactttgtgtggttcttattcttaatt 2505885  T
Q  115 aggcactcctactaaataagctatatatttttaactttttgttgttcttgggaaatgatttgtctggcatgaattttttctccagtgaactaatctcaac 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  2505886 aggcactcctactaaataagctatatatttttaactttttgtggttcttgggaaatga-ttgtctggcatgaattttttctcctgtgaactaatctcaac 2505984  T
Q  215 cattcattcattttaatgatagctgagctcatctcaacccttcattcatta--attannnnnnnnnngacaagttcattcatcttgtatggtaccgtggt 312  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||           ||||||||||||||||||||||||||||||||    
T  2505985 aattcattcattttaatgatagctgagctcatctcaacccttcattcattattattattattttttttacaagttcattcatcttgtatggtaccgtggt 2506084  T
Q  313 caaccatcgcagagcaatcctcaaccgaaccgaagttcctcatccactacattggtttgttgtagcatgagcacaacaactgcgccatccttaagctttg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2506085 caaccatcgcagagcaatcctcaaccgaaccgaagttcctcatccactacattggtttgttgtagcatgggcacaacaactgcgccatccttaagctttg 2506184  T
Q  413 ttcccagacaggtcaacattaaatcattacacgtttgtagtgatgttctatattttcatatccct 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2506185 ttcccagacaggtcaacattaaatcattacacgtttgtagtgatgttctatattttcatatccct 2506249  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 9507380 - 9507425
Alignment:
Q  427 aacattaaatcattacacgtttgtagtgatgttctatattttcata 472  Q
    ||||||| ||||||||| ||||||||| |||||| |||||||||||    
T  9507380 aacattagatcattacaagtttgtagtaatgttcgatattttcata 9507425  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 9515355 - 9515400
Alignment:
Q  427 aacattaaatcattacacgtttgtagtgatgttctatattttcata 472  Q
    ||||||| ||||||||| ||||||||| |||||| |||||||||||    
T  9515355 aacattagatcattacaagtttgtagtaatgttcgatattttcata 9515400  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 8681912 - 8681984
Alignment:
Q  190 ttttctccagtgaactaatctcaaccattcattcattttaatgatagctgagctcatctcaacccttcattca 262  Q
    |||||||| | ||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||    
T  8681912 ttttctcctgcgaactaatctcaaccattcattccttttaatgacagttgagctcatctcaaccctccattca 8681984  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 30916398 - 30916473
Alignment:
Q  189 tttttctccagtgaactaatctcaaccattcattcattttaatgatagctgagctcatctcaacccttcattcatt 264  Q
    ||||||||| |||| |||||||||||||||||||  ||||||||| |||| | |||||||||||||||||||||||    
T  30916398 tttttctcctgtgagctaatctcaaccattcatttcttttaatgacagcttaactcatctcaacccttcattcatt 30916473  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 7361274 - 7361332
Alignment:
Q  202 aactaatctcaaccattcattcattttaatgatagctgagctcatctcaacccttcatt 260  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  7361274 aactaatctcaaccattcattccttttaatgacagttgagctcatctcaacccttcatt 7361332  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 7362091 - 7362022
Alignment:
Q  190 ttttctccagtgaactaatctcaaccattcattcattttaatgatagctgagctcatctcaacccttcattcatt 264  Q
    |||||||| |||||||||||||| |||||||||| ||||||  ||   ||||||||||| ||||||| |||||||    
T  7362091 ttttctcctgtgaactaatctcagccattcattccttttaa--at---tgagctcatctaaaccctttattcatt 7362022  T

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Target: scaffold2125 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 477
Target Start/End: Complemental strand, 1051 - 999
Alignment:
Q  425 tcaacattaaatcattacacgtttgtagtgatgttctatattttcatatccct 477  Q
    |||| |||| |||||||||  |||||| ||||||||||||| |||||||||||    
T  1051 tcaatattagatcattacaattttgtaatgatgttctatatgttcatatccct 999  T

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