View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_60 (Length: 248)
Name: NF15927_high_60
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_60 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 41977739 - 41977508
Alignment:
| Q |
17 |
aatatgaatatataactgaaacatagcttgcaaaatctggaaaacactattgtcaaaggaaaactaacagagaaagaaccttatctatataactaacaaa |
116 |
Q |
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| T |
41977739 |
aatatgaatatataactgaaacatagcttgcaaaatctggaaaacactattgtcaaaggaaaacaaacagagaaagaaccttatctatataactaacaaa |
41977640 |
T |
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| Q |
117 |
aagcttacaatccttacaagcatatgtataaaaaactttcacttaactttagattttcaaagcaatagagaaatattgatgatggatatattttttctgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41977639 |
aagcttacaatccttacaagcatatgtataaaaaactttcacttaactttagattttcaaagcaatagagaaatattgatgatggatatattttttctgc |
41977540 |
T |
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| Q |
217 |
tatgctgaaacttgaaaatttctaagcaattt |
248 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41977539 |
tatgctgaaacttgaaaatttctaagcaattt |
41977508 |
T |
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