View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_61 (Length: 247)
Name: NF15927_high_61
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 9102756 - 9102967
Alignment:
| Q |
14 |
caaaggcatatgcaatgaagttcttaccccggtgaggtcaacttgctttgcgacttcactccctttctacacggtttcatccacattaatcaatcgatgc |
113 |
Q |
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| T |
9102756 |
caaaggcatatgcaatgaagttcttaccacggtgaggtcaacttgctttgcgacttcactccctttctacacggtttcatccacattaatcaatcgatgc |
9102855 |
T |
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| Q |
114 |
tcaatgtgatcaactggtttcaacgtgttggttgtgtccaagttgacccttttctttagtacatattgctacaaaagtttctttgatgctgataatcttt |
213 |
Q |
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| T |
9102856 |
tcaatgtgatcaactggtttcaacgtgttggttgtgtccaagttgacccttttctttagtacatattgctataaaagtttctttgatgctggtaatcttt |
9102955 |
T |
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| Q |
214 |
atccaaaggttt |
225 |
Q |
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|||||||||||| |
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| T |
9102956 |
atccaaaggttt |
9102967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 9096874 - 9097086
Alignment:
| Q |
14 |
caaaggcatatgcaatgaagttcttaccccggtgaggtcaacttgctttgcgacttcactccctttctacacggtttcatccacattaatcaatcgatgc |
113 |
Q |
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| T |
9096874 |
caaagacatatggaatgaagtgcttaccttggtttggtcaacttgcttttcgacttcacttcctttctccatagtttaatccacattaatcaattgctgc |
9096973 |
T |
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| Q |
114 |
tcaatgtgatcaactggtttcaacgtgttggttgtgtccaagttgacccttttctttagtacatattgctacaaaagtttctttgatgct-gataatctt |
212 |
Q |
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| T |
9096974 |
ttcatgtgatcaactggtttcgacgtgatgtatgtgtccatgttgaccactttctttggtacatcttgctacaaaagtttctttgatgttggctaatctt |
9097073 |
T |
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| Q |
213 |
tatccaaaggttt |
225 |
Q |
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| T |
9097074 |
tatcgaaaggttt |
9097086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 21796499 - 21796589
Alignment:
| Q |
90 |
tcatccacattaatcaatcgatgctcaatgtgatcaactggtttcaacgtgttggttgtgtccaagttgacccttttctttagtacatatt |
180 |
Q |
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| T |
21796499 |
tcatccacattgatgaatggatgctcaacgtgatcaattggtttcgacgtgatggttgtttccacatcgaccactttctttggtacatatt |
21796589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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