View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_66 (Length: 239)
Name: NF15927_high_66
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_66 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1087670 - 1087908
Alignment:
| Q |
1 |
caataacttatttgaaccaaacaactagtcatcgagaacgtgttaattggattccagaagacgatccttggagtgttattgagtcagtgccataagatga |
100 |
Q |
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| T |
1087670 |
caataacttatttgaaccaaacaactagtcatcgcgaacgtgttaattggattccagaagacgatacttggagtgttattgagtcgttgccaaaagatga |
1087769 |
T |
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| Q |
101 |
ttgtgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccacaa |
200 |
Q |
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| T |
1087770 |
ttgtgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccaaaa |
1087869 |
T |
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| Q |
201 |
aattgggacgcatcaaattggacacaaggatgtgtgcgc |
239 |
Q |
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| T |
1087870 |
aattgggacgcatcaaattggacacaaggatgtgtgcgc |
1087908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1047196 - 1047434
Alignment:
| Q |
1 |
caataacttatttgaaccaaacaactagtcatcgagaacgtgttaattggattccagaagacgatccttggagtgttattgagtcagtgccataagatga |
100 |
Q |
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| T |
1047196 |
caataacttatttgaaccaaacgcttagtcttcacgaacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagatga |
1047295 |
T |
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| Q |
101 |
ttgtgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccacaa |
200 |
Q |
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| T |
1047296 |
ttgtgatgtctataatcattgtggcccatatggaaattgcatttataacccgtctccaatttgtcaatgtttagatgggtttgagcctaaatcaccacaa |
1047395 |
T |
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| Q |
201 |
aattgggacgcatcaaattggacacaaggatgtgtgcgc |
239 |
Q |
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| T |
1047396 |
aattgggacgcatcaaattggacacaaggatgtgtgcgc |
1047434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1072009 - 1072247
Alignment:
| Q |
1 |
caataacttatttgaaccaaacaactagtcatcgagaacgtgttaattggattccagaagacgatccttggagtgttattgagtcagtgccataagatga |
100 |
Q |
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| T |
1072009 |
caataacttatttgaaccaaacgcttagtcttcatgaacgcgttatatggagtccagaggacaacacttggagcgatattcagtcagtaccaaaaaatga |
1072108 |
T |
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| Q |
101 |
ttgtgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccacaa |
200 |
Q |
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| T |
1072109 |
ttgtgatgtctataatcgttgcggcccttatggaaattgcattcataacccgtctccaatttgccaatgtttagatgggtttgagcctaaatcaccacaa |
1072208 |
T |
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| Q |
201 |
aattgggacgcatcaaattggacacaaggatgtgtgcgc |
239 |
Q |
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| T |
1072209 |
aattggtacgcatcaaattggacacaaggatgtgtgcgc |
1072247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 95 - 238
Target Start/End: Original strand, 1104317 - 1104460
Alignment:
| Q |
95 |
agatgattgtgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcg |
194 |
Q |
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| T |
1104317 |
agatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcg |
1104416 |
T |
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| Q |
195 |
ccacaaaattgggacgcatcaaattggacacaaggatgtgtgcg |
238 |
Q |
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| T |
1104417 |
ccacaaaattgggacacatttaattggacacaaggatgtgtgcg |
1104460 |
T |
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