View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_high_7 (Length: 547)
Name: NF15927_high_7
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 22048365 - 22047846
Alignment:
| Q |
18 |
agagaaagggaaacatgcatgatagagagtatagtcatgatcatagaggaagacatgctttgaatggagggagaggttgtccctctaaaaggtctgatgt |
117 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22048365 |
agagaaaaggaaacatgcatgatagaaagtatagtcattatcatagaggaagacatgctttgaatggagggagaggttgtccctctaaaaggtctgatgt |
22048266 |
T |
|
| Q |
118 |
tgtttccaaatgtcagtttaataaagtactatttgatgacagtttccttctcccctttcttccacaaattgttttctcactcactagtttcgtctttttt |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
22048265 |
tgtttccaaatgtcggtttaataaagtactatttgatgacagtttccttcacccctttcttccacaaattgttttctcactcactactttcctctttttt |
22048166 |
T |
|
| Q |
218 |
ctttgaaggatggtaatttcatgaaattaactattgtgcatgtgctaataaatataacattgatagtgaataaatgaatctattacttatcagcccatgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22048165 |
ctttgaaggatggtaatttcatgaaattaactattgtgcatgtgctaataaatataacattgatagtgaataaatgaagctattacttatcagcccatga |
22048066 |
T |
|
| Q |
318 |
tattaaggttagagcactaatacaccatcacttctatcttcaaacattatcatagataatttgggtacgtatttacttctgtgatgtaattagttttgat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
22048065 |
tattaaggttagagcactaatacaccatcacttctatcttcaaacattatcatagataatttgggtacgtatttacttctgtgatgtaattaattttgat |
22047966 |
T |
|
| Q |
418 |
taattggaaggagttttctaatttgttgcatgaccaaaatatttcgttagagtctattctttcacatgagtgagggaatatttatgagtctattctttca |
517 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
22047965 |
taattggaaggagtcttctagtttgttgcatgaccaaaatatttcgtttgagtctattctttcacatgagtgagggaatatttatgagtctattttttca |
22047866 |
T |
|
| Q |
518 |
ttttccattccattgttcat |
537 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
22047865 |
ttttccattccattgttcat |
22047846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 22039031 - 22038512
Alignment:
| Q |
18 |
agagaaagggaaacatgcatgatagagagtatagtcatgatcatagaggaagacatgctttgaatggagggagaggttgtccctctaaaaggtctgatgt |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
22039031 |
agagaaaggaaaacatgcatgatagagagtatagtcatgatcatagaggaagacatgctttgaatggagggagaggctgtccctctaaaaggtctgatgt |
22038932 |
T |
|
| Q |
118 |
tgtttccaaatgtcagtttaataaagtactatttgatgacagtttccttctcccctttcttccacaaattgttttctcactcactagtttcgtctttttt |
217 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
22038931 |
tgtttccaaatatcggtttaattaagtactatttgatgacagtttccttctcccctttcttccacaaattgttttctcactcactactttcgtctttttt |
22038832 |
T |
|
| Q |
218 |
ctttgaaggatggtaatttcatgaaattaactattgtgcatgtgctaataaatataacattgatagtgaataaatgaatctattacttatcagcccatgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| || |
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|
| T |
22038831 |
ctttgaaggatggtaatttcatgaaattaactattgtgcatgtgctaataaatataaaattgatagtgaatggatgaagctattacttatcagcccacgt |
22038732 |
T |
|
| Q |
318 |
tattaaggttagagcactaatacaccatcacttctatcttcaaacattatcatagataatttgggtacgtatttacttctgtgatgtaattagttttgat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
22038731 |
tattaaggttagagcactaatacaccatcacttctatcttcaaacattatcatagataatttgggtacgtatttacttctgtgatgtaattaattttgat |
22038632 |
T |
|
| Q |
418 |
taattggaaggagttttctaatttgttgcatgaccaaaatatttcgttagagtctattctttcacatgagtgagggaatatttatgagtctattctttca |
517 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
22038631 |
taattggaaggagtcttcttatttgttgcatgaccaaaatatttcgttggagtctattctttcacatgagtgagggaatatttatgagtctattatttca |
22038532 |
T |
|
| Q |
518 |
ttttccattccattgttcat |
537 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
22038531 |
ttttccattccattgttcat |
22038512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 302 - 526
Target Start/End: Original strand, 29405467 - 29405693
Alignment:
| Q |
302 |
acttatcagcccatgttattaaggttagagcactaatacaccatcacttctatcttca---aacattatcatagataatttgggtacgtatttacttctg |
398 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| | |||| |||||| || ||||||||||||||||||||||| ||||| ||||| |
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|
| T |
29405467 |
acttatcagcccctgttattaaggttagaggactaatacaccagcccttcaatcttcttctaagattatcatagataatttgggtacatattttcttcta |
29405566 |
T |
|
| Q |
399 |
tgatgtaattagttttgattaattggaaggagttttctaatttgttgcatgaccaaaatatttcgttagagtctattctttcacatgagtgagggaatat |
498 |
Q |
| |
|
| |||||||| ||||| || |||||||||||| ||| ||| |||||||||| || | | ||| | |||||||||| ||||||||||||||||||||| |
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|
| T |
29405567 |
taatgtaattgattttgcttgattggaaggagtcttcatatt-gttgcatgacaaataaaaatcgatggagtctattcattcacatgagtgagggaatat |
29405665 |
T |
|
| Q |
499 |
ttatgagtctattctttcattttccatt |
526 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
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| T |
29405666 |
ttatgagtctattctttcatttttcatt |
29405693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 254
Target Start/End: Original strand, 29405369 - 29405400
Alignment:
| Q |
223 |
aaggatggtaatttcatgaaattaactattgt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29405369 |
aaggatggtaatttcatgaaattaactattgt |
29405400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 280 - 526
Target Start/End: Original strand, 23775945 - 23776205
Alignment:
| Q |
280 |
atagtgaataaatgaatctattacttatcagcccatgttattaaggttagagcactaatacaccatcacttctatcttc---aaacattatcatagataa |
376 |
Q |
| |
|
||||||||| ||||| || | |||||||||||| ||||||||||||||||||||||||||| || | ||||| ||||| || |||||||||||||| |
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|
| T |
23775945 |
atagtgaatggatgaagctgtgacttatcagcccctgttattaaggttagagcactaatacatcagcccttctctcttcttttaagattatcatagataa |
23776044 |
T |
|
| Q |
377 |
tttgggtacgtatttacttctgtgatgtaattagttttgattaattggaaggagttttctaatttgttgcatgac------------caaaatatttcgt |
464 |
Q |
| |
|
||||||||| ||||| ||||| | |||||||| ||||| || | |||||||||| ||| | |||||||||||| |||| | ||| |
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|
| T |
23776045 |
tttgggtacatatttgcttctataatgtaattgattttgcttgaatggaaggagtcttc-atattgttgcatgacaaaaaaaaaaaaaaaaaaaaatcga |
23776143 |
T |
|
| Q |
465 |
tagagtctattctttcacatgagtgagggaatatttatgagtctattctttcattttccatt |
526 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23776144 |
tggagtctattctttcacatgagagagggaatatttatgagtctattctttcattttccatt |
23776205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 7043838 - 7043933
Alignment:
| Q |
99 |
cctctaaaaggtctgatgttgtttccaaatgtcagtttaataaagtactatttgatgacagtttccttctcccctttcttccacaaattgttttctcact |
198 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| ||||||| ||||||||||||| ||||| |||| |||||||||| || ||||||||||||||| |
|
|
| T |
7043838 |
cctctaaaaggtctgatgtcgttttcaactgtccgtttaat----tactatttgatgaatgtttctttctaccctttcttcaactaattgttttctcact |
7043933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 23775859 - 23775914
Alignment:
| Q |
212 |
ttttttctttgaaggatggtaatttcatgaaattaactattgtgcatgtgctaata |
267 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
23775859 |
tttttttttttaaggatggtaatttcatgaaattaactattgtctatgtgttaata |
23775914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 17722514 - 17722609
Alignment:
| Q |
99 |
cctctaaaaggtctgatgttgtttccaaatgtcagtttaataaagtactatttgatgacagtttccttctcccctttcttccacaaattgttttctcact |
198 |
Q |
| |
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||||||||||||||||||| |||| ||| | || ||| ||| ||||||||||||| ||||| ||||||||||||||| || ||||||||||||||| |
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|
| T |
17722514 |
cctctaaaaggtctgatgtcgttttcaactatccgttgaat----tactatttgatgaatgtttctttctcccctttcttcaactaattgttttctcact |
17722609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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