View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_1 (Length: 890)
Name: NF15927_low_1
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 24795152 - 24794934
Alignment:
| Q |
24 |
ttccactaagactattcataaaccttgcaaaaactctttctgtttcaggacttgaaggtctattgaaaagatgctcataaaactctttatcaatgatatt |
123 |
Q |
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| T |
24795152 |
ttccactaagactattcataaaccttgcaaaaactctttctgtttcaggacttgaaggtctattgaaaagatgctcataaaactctttatcaatgatatt |
24795053 |
T |
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| Q |
124 |
cgaaaaatatgaacttggagctgatttaaaccgtgttaaccctgaattcatttgttgttgatgatgatgattttgatgatctagaaacatagttggatgc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24795052 |
cgaaaaatatgaacttggagctgatttaaaccgtgttaaccctgaattcatttgttgttgatgatgatgattttgatgatctagaaacatagttggatgc |
24794953 |
T |
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| Q |
224 |
tgctgaagatctgattcca |
242 |
Q |
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||||||||||||||||||| |
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| T |
24794952 |
tgctgaagatctgattcca |
24794934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 461 - 727
Target Start/End: Complemental strand, 24794712 - 24794445
Alignment:
| Q |
461 |
agctgttttgtgttatgattttccaagtttttatcactcagcatcaaaacaaacggcaaactgtttagctatgacaagacatgaccaaaaac-aacaaag |
559 |
Q |
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| T |
24794712 |
agctgttttgtgttatggttttccaagtttctatcactcagcatcaaaacaaacggcaaactgtttagctatgacaagacatgaccaaaaactaacaaag |
24794613 |
T |
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| Q |
560 |
acaatagttcggaagaaaccaagttctatttctggtgtaacaattttttatcagactttacttatctctatggaactccagattatcggtgtctcggata |
659 |
Q |
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| T |
24794612 |
acaatagttcggaagaaaccaagttcgatttctgatataacaattttttatcagactttacttacctctatcgaactccagattaccgatgtctcggata |
24794513 |
T |
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| Q |
660 |
gttaaacaaaaaacatatacaaagatatgaactatgaaatatgaatactatgaactcaataataacat |
727 |
Q |
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| T |
24794512 |
gttaaacaaaaaacatatacaaagatatgaactatgaaatatgaatactatgaacttaacaataacat |
24794445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 263 - 381
Target Start/End: Complemental strand, 24794910 - 24794792
Alignment:
| Q |
263 |
aacaattcctgtaaaaataaaaatttgatctttgttaaaattttcaacacaagaatttctaagatctaataaaaatcaataacaaagaaaacccaccaag |
362 |
Q |
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| T |
24794910 |
aacaattcctgtaaaaataaaaatttgatctttgttaaaattttcaacacaagaatttctaagatctaataaaaatcaataacaaagaaaacccaccaag |
24794811 |
T |
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| Q |
363 |
gaaatcaatttatttcact |
381 |
Q |
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| T |
24794810 |
gaaatcaatttatttcact |
24794792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 762 - 873
Target Start/End: Complemental strand, 24794410 - 24794299
Alignment:
| Q |
762 |
tatacctctacttcaacaattttttgttgttgtgttggggggtgtggatttaatgtagcgtgtagtgaagagagtggaggtgtagaaatgaaagtgaaga |
861 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24794410 |
tatacctctacttcaacaattttttgttgttgtgttggggggtgtggatttaatgtagcgtgtagtgaagagagtggaggtgtagaaatgaaagtgaaga |
24794311 |
T |
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| Q |
862 |
aacctctatagg |
873 |
Q |
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|||||||||||| |
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| T |
24794310 |
aacctctatagg |
24794299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 42021608 - 42021480
Alignment:
| Q |
41 |
ataaaccttgcaaaaactctttctgtttcaggacttgaaggtctattgaaaagatgctcataaaactctttatcaatgatattcgaaaaatatgaacttg |
140 |
Q |
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|||||||||| |||||||| |||||||| |||||||| ||| ||||||||| |||||| || || ||| | |||||||| || ||||||||||||| |
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| T |
42021608 |
ataaaccttgaaaaaactcgctctgtttctggacttgatggtttattgaaaacatgctcgtagaattctctgtcaatgatgttgttgaaatatgaacttg |
42021509 |
T |
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| Q |
141 |
gagctgatttaaaccgtgttaaccctgaa |
169 |
Q |
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| T |
42021508 |
gtgctgatttaaaccgtgttaaacctgaa |
42021480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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