View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_10 (Length: 545)
Name: NF15927_low_10
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 43462870 - 43463398
Alignment:
| Q |
1 |
tatgcatcgtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactcttaaagcaattgattttggattgtctagtttcttcaaa |
100 |
Q |
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| T |
43462870 |
tatgcattgtgatcttaagcctgaaaattttctttttgttgatggacatgaagattcaactcttaaagcaattgattttggattgtctagtttcttcaaa |
43462969 |
T |
|
| Q |
101 |
ccaggtatggaaataatccccttctccaatttataccaatctccaaccatttcttgaaacctactattggtactgtaatgatcatatatagtctttgtga |
200 |
Q |
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| T |
43462970 |
ccaggtatggaaataatccccttctccaatttataccaatctctaaccatttcttgaaacctactattggtactgtaatgataatatatagtctttgtga |
43463069 |
T |
|
| Q |
201 |
ctaacaatcttcttttgcaggagaaaaatttagtgatgcggtaggaagtccttattatatggcacctgaggttataagagagtgttatgggccagaagct |
300 |
Q |
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| T |
43463070 |
ctaacaatcttctattgcaggagaaaaatttagtgatgcagtaggaagtccttattatatggcacctgaggttataagagagtgttatgggccagaagct |
43463169 |
T |
|
| Q |
301 |
gatgtgtggagtgcaggtgtgatcatatactttctcttatgtggagcacctccctttgatggtggtaagttatcttcatgatctttacgttttgtttcat |
400 |
Q |
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| T |
43463170 |
gatgtgtggagtgcgggtgtgatcatatactttttcttatgtggagcacctccatttgatggtggtaagttatcttcatgatctttacgttttgtttcat |
43463269 |
T |
|
| Q |
401 |
ttctattccc--nnnnnnnngcttcatataaaaatagtggattttgattttgttctttggtaatagaattggagcaagagatatttgataaggttttaca |
498 |
Q |
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| T |
43463270 |
ttctattcccttttttttttgcttcatataaaaatagtggattttgattttgttctttggtaatagaattggagcaagagatatttgataaggttttaca |
43463369 |
T |
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| Q |
499 |
tggtgaaattgatttctcttcggatcctt |
527 |
Q |
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| T |
43463370 |
tggtgaaattgatttctcttcggatcctt |
43463398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 159 - 527
Target Start/End: Original strand, 43454318 - 43454682
Alignment:
| Q |
159 |
acctactattggtactgtaatgatcatatatagtctttgtgactaacaatcttcttttgcaggagaaaaatttagtgatgcggtaggaagtccttattat |
258 |
Q |
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| T |
43454318 |
acctactattggt---gtaatgatcatatatagtctttgttactaacaatcttcttttacaggggaaaaatttagtgattttgtcggaagtgcttattat |
43454414 |
T |
|
| Q |
259 |
atggcacctgaggttataagagagtgttatgggccagaagctgatgtgtggagtgcaggtgtgatcatatactttctcttatgtggagcacctccctttg |
358 |
Q |
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| T |
43454415 |
gttgcacctgaggttatagaagagtgttatgggccagaagctgatgtatggagtgcaggtgtgatcatatacattctcttatgtggaacacctccctttt |
43454514 |
T |
|
| Q |
359 |
atggtggtaagttatcttcatgatctttacgttttgtttcatttctattcccnnnnnnnngcttcatataaaaatagtggattttgattttgttctttgg |
458 |
Q |
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| T |
43454515 |
atggtggtaagatatcttcacgatcttttctttttgtttcatttcttttccc-tttttttgtttcatataataatagaggattttgattatgttctttgg |
43454613 |
T |
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| Q |
459 |
taatagaattggagcaagagatatttgataaggttttacatggtgaaattgatttctcttcggatcctt |
527 |
Q |
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| T |
43454614 |
taatagaattggatcgagagatatttgatgaggttttacatggtgaagttgatttctgttccgatcctt |
43454682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 43453431 - 43453581
Alignment:
| Q |
1 |
tatgcatcgtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactcttaaagcaattgattttggattgtctagtttcttcaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||| ||||||||||||||| |||| | |||||||||| |
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| T |
43453431 |
tatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattccactcttatggcaattgattttggactgtccattttcttcaaa |
43453530 |
T |
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| Q |
101 |
ccaggtatggaaataatccccttctccaatttataccaatctccaaccatt |
151 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
43453531 |
ccaggtttggaaataatccccttctccaaattataccaatctctaaccatt |
43453581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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