View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_11 (Length: 533)
Name: NF15927_low_11
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 180 - 475
Target Start/End: Complemental strand, 38396076 - 38395784
Alignment:
| Q |
180 |
gttggaggggactggtgatcacagttgactacttgacttgacttatggtgaaatcaaatgaaaagtgacacgtgtcgcttgattatgtggggggagaaca |
279 |
Q |
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| T |
38396076 |
gttggaggggactggtgatcacagttgactacttgacttgacttatggtgaaatcaaacgaaaagtgacacgtgtcgattgattaagtggggggagaaca |
38395977 |
T |
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| Q |
280 |
ttataatccacctgatgtttttgtgtttgggcaatcatgtgaacttaaccttaagaaggtgaaccctcatagtcgtaggtggttcgtactacctttatgc |
379 |
Q |
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| T |
38395976 |
ttataatccacctgatgtttttgtgtttgggcaatcatgtgaacttaaccttaagaaggtgaaccctcatagtcgtaggtggttcgtactacctttatg- |
38395878 |
T |
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| Q |
380 |
tattatacaaactatttacctagctaccctttttccttcatccatctttacaagttacaatacaaatttttagagtaaagtttggttatattatct |
475 |
Q |
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| T |
38395877 |
--atatacaaactatttacctagctaccctttttccttcatccatctttacaagttacaatacaaatttttagagtaaagtttggttatattatct |
38395784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 38396249 - 38396140
Alignment:
| Q |
8 |
gtaagtgatgagggagtaaaagcatttttgtgttacacgtaaagtgtacctattaaccttagggagatggggtggggttgatgaaaaaagttagattaga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
38396249 |
gtaagtgatgagggagtaaaagcatttttgtgttacacgtaaagtgtacctattaaccttagggagatggggtggggttgatggaaaaagttagaataga |
38396150 |
T |
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| Q |
108 |
tcagacggtg |
117 |
Q |
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| T |
38396149 |
tcggacggtg |
38396140 |
T |
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