View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15927_low_12 (Length: 525)

Name: NF15927_low_12
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15927_low_12
NF15927_low_12
[»] chr1 (6 HSPs)
chr1 (18-517)||(246554-247053)
chr1 (35-452)||(234916-235334)
chr1 (90-451)||(8814358-8814731)
chr1 (91-456)||(231334-231706)
chr1 (90-453)||(251388-251751)
chr1 (300-355)||(4439829-4439884)
[»] chr6 (9 HSPs)
chr6 (305-457)||(7025724-7025882)
chr6 (305-455)||(7041470-7041620)
chr6 (301-441)||(7046809-7046949)
chr6 (365-456)||(7029847-7029938)
chr6 (97-157)||(7046587-7046647)
chr6 (97-179)||(213349-213431)
chr6 (365-455)||(9170851-9170941)
chr6 (305-455)||(7012788-7012944)
chr6 (305-455)||(9159487-9159643)
[»] chr3 (22 HSPs)
chr3 (305-422)||(41985602-41985719)
chr3 (83-162)||(9626768-9626847)
chr3 (300-421)||(9617489-9617610)
chr3 (324-453)||(9448307-9448436)
chr3 (309-453)||(9343823-9343967)
chr3 (300-356)||(9425542-9425598)
chr3 (111-182)||(9495100-9495171)
chr3 (105-161)||(9357141-9357197)
chr3 (308-356)||(9397762-9397810)
chr3 (308-356)||(9407343-9407391)
chr3 (300-355)||(9494900-9494955)
chr3 (119-161)||(9402160-9402202)
chr3 (119-161)||(9420399-9420441)
chr3 (370-455)||(9395298-9395383)
chr3 (368-421)||(41980891-41980944)
chr3 (105-157)||(9347299-9347351)
chr3 (300-355)||(9352870-9352925)
chr3 (300-351)||(9377055-9377106)
chr3 (312-422)||(9655382-9655492)
chr3 (287-355)||(9402335-9402403)
chr3 (287-355)||(9420574-9420642)
chr3 (312-356)||(9626571-9626615)
[»] chr2 (2 HSPs)
chr2 (300-355)||(20694393-20694448)
chr2 (206-238)||(20694498-20694530)
[»] chr7 (3 HSPs)
chr7 (101-162)||(3650603-3650664)
chr7 (128-167)||(450419-450458)
chr7 (101-162)||(3706873-3706934)
[»] chr5 (1 HSPs)
chr5 (291-347)||(18571068-18571124)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 246554 - 247053
Alignment:
Q  18 aaatccgtagtcaatgtaacattacaatttttcttgttctacaagtactaggggaaatgtttactcaatcttacaacaaaaattaagcacaataaagcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  246554 aaatccgtagtcaatgtaacattacaatttttcttgttctacaagtactagttgaaatgtttactcaatcttacaacaaaaattaagctcaataaagcta 246653  T
Q  118 tatcaaaatcacattagaaatctttcaatgcaagataacatactctgttactaattcagcttcttcatctgagatggcaaaacaattcaaaatattcagg 217  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  246654 tatcaaaatcacattagaaacctttcaatgcaagataatatactctgttactaattcagcttcttcatctgagatggcaaaacaattcaaaatattcagg 246753  T
Q  218 ataatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattc 317  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  246754 ataatcggacaaaggtaaaagtcgaccatcatcccagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattc 246853  T
Q  318 cctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttct 417  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  246854 cctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaacttcacccatttct 246953  T
Q  418 tctcccttgcattaagcttaaacacgtcaatccttacacatccgcgatcatcatcaaacctatgtttgtaaacatctattaacaacaaatcacctttgct 517  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  246954 tctcccttgcattaagcttaaacaagtcaatccttacacatccgcgatcatcatcaaacctatgttcgtaaacatctattaacaacaaatcacccttgct 247053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 35 - 452
Target Start/End: Original strand, 234916 - 235334
Alignment:
Q  35 aacattacaatttttcttgttctacaagtactaggggaaatgtttactcaa-tcttacaacaaaaattaagcacaataaagctatatcaaaatcacatta 133  Q
    |||||| ||||||||||| |||||| | ||||||  || | ||||| || | ||| ||||||||||  |||||| ||||||||| |||| ||||| ||||    
T  234916 aacattgcaatttttctttttctactaatactagtcgacaagtttattcgactctgacaacaaaaacaaagcacgataaagctacatcacaatcagatta 235015  T
Q  134 gaaatctttcaatgcaagataacatactctgttactaattcagcttcttcatctgagatggcaaaacaattcaaaatattcaggataatcggacaaaggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  235016 gaaacctttcaatgcaagataacatactctgttactaattcagcttcttcatctgagatggcaaaacaattcagaatattcagggtaattggacaaaggt 235115  T
Q  234 aaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacgagtgaagatattatccataatgatgacacaattccctttgggaacacaca 333  Q
    |||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  235116 aaaagttgaccatcatccaagtccaaaaaagagctcttatactgcacacgagtgaagatattatccataatgatgactaaattccctttgggaacacaca 235215  T
Q  334 aatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaag 433  Q
    ||||| ||||||||||||||||  | || | |||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||| || |||||||    
T  235216 aatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcattaag 235315  T
Q  434 cttaaacacgtcaatcctt 452  Q
    ||||||||||| |||||||    
T  235316 cttaaacacgttaatcctt 235334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 90 - 451
Target Start/End: Complemental strand, 8814731 - 8814358
Alignment:
Q  90 acaacaaaaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactctgttactaattcagcttctt-----ca 184  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||   ||||||||||||     ||    
T  8814731 acaacaaaaactaagcacaatgaagctatatcacaatcacattagaaacctttcaatgcaagataacatacactgttatgcattcagcttctttagacca 8814632  T
Q  185 tct------gagatggcaa-aacaattcaaaatattcaggataatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccg 277  Q
    ||       ||| |||| | ||||||| | ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||| | || |  |    
T  8814631 tccactttggaggtggccagaacaatttagaatattcaggataatcgaacaaaggcaaaggtcgaccatcatccaagtccaaaaaatagcccatagaagg 8814532  T
Q  278 cacacgagtgaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaac 377  Q
      ||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||  ||||||| |||    
T  8814531 atcacaagtgaagatatcatccataatgatcacacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaac 8814432  T
Q  378 aaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatcct 451  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||| || | ||||||||||||| |||||||||    
T  8814431 aaaactctatcccctaaattcgccaacttcacccacttcttctccttttcgttaagcttaaacatgtcaatcct 8814358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 91 - 456
Target Start/End: Original strand, 231334 - 231706
Alignment:
Q  91 caacaaaaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactctgttactaattcagcttcttcatc---- 186  Q
    |||||||||||||| ||||||||||||||||| | | |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||        
T  231334 caacaaaaattaagtacaataaagctatatcacagttacattagaaacctttcaatgcaagataacatactttgttactaattcagctactttatccact 231433  T
Q  187 --tgagatggcaa-aacaattcaaaatattcaggataatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacg 283  Q
      |||| |||||  ||||||||||||||||||| ||| |||  |||||| ||||| |||||||||||||||||||||||      |  |||  || ||      
T  231434 tttgaggtggcacgaacaattcaaaatattcagcatagtcgatcaaaggcaaaagccgaccatcatccaagtccaaaaa------cacacagggcgcatt 231527  T
Q  284 agtgaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaa------aattaccagaacaaccccaagaac 377  Q
    | |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||      ||| | || |   |||||||||||    
T  231528 actgaaaatattatccataatgatgacacaattcccttttggaacacataaatccaaagcagaagcagaagcagaaaatgaacatagggaccccaagaac 231627  T
Q  378 aaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacac 456  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||| || ||||||||||    
T  231628 aaaactatatcccctaaattagccaacttcacccacttcatctcctttgcattgagcttaaacacatctatccttacac 231706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 90 - 453
Target Start/End: Complemental strand, 251751 - 251388
Alignment:
Q  90 acaacaaaaattaagcacaataaagctatatc--aaaatcacattagaaatctttcaatgcaagataacatactctgttactaattcagcttcttcatct 187  Q
    ||||||||||  |||||||||||||||||||   | ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||     
T  251751 acaacaaaaacaaagcacaataaagctatatatgacaatgacattagaaacctttcaatgcaagataacatactttgttactaattcagcttctttatcc 251652  T
Q  188 gagatgg-caaaacaattcaaaatattcaggataatcggacaaaggtaaaagtcgaccatcatccaagtccaaaaaagagctcttacaccgcacacgagt 286  Q
    ||| ||  |  ||||||| | |||||| |||||||  |||||||   ||||  | ||||||||||||||||||||||||| |||||||   |   ||| |    
T  251651 gaggtgtacggaacaatttagaatatttaggataactggacaaatccaaaaccctaccatcatccaagtccaaaaaagaggtcttacaatac---cgatt 251555  T
Q  287 gaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactata 386  Q
    ||||||||||||||||||||| |||||||||| |||  |||||||||||||| | |||||| |||||||| | || | | ||||||||||||||||| ||    
T  251554 gaagatattatccataatgatcacacaattccgtttccgaacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactcta 251455  T
Q  387 tcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatcctta 453  Q
    ||||||| ||| |||||||| ||||| ||||| ||| || |||||||||||||||||| ||||||||    
T  251454 tcccctatattcgccaactttacccacttcttttccttttcattaagcttaaacacgttaatcctta 251388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 4439829 - 4439884
Alignment:
Q  300 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 355  Q
    |||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  4439829 ataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaa 4439884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 457
Target Start/End: Original strand, 7025724 - 7025882
Alignment:
Q  305 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaac------cccaagaacaaaactatatcccctaaatta 398  Q
    ||||||| |||||||||||| ||||||||||||  ||||| ||||||||||  | || | ||||      ||||||||||||||  |||| |||||| |     
T  7025724 gatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaaactc 7025823  T
Q  399 gccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacaca 457  Q
    | |||||||||||| ||||||||| |  |||||||||||||||  ||||||||||||||    
T  7025824 gtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacaca 7025882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 455
Target Start/End: Original strand, 7041470 - 7041620
Alignment:
Q  305 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaac 404  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| |||| ||  | || |     ||||||||||||||  ||||||||||| ||| ||||    
T  7041470 gatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaac 7041569  T
Q  405 ttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 455  Q
    |||||||| ||||||||| |  ||||||| |||||||  ||||||| ||||    
T  7041570 ttcacccacttcttctccttctcattaagtttaaacaaatcaatccataca 7041620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 441
Target Start/End: Original strand, 7046809 - 7046949
Alignment:
Q  301 taatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagc 400  Q
    ||||||| |||||||||||||||| |||| |||||||  ||  ||||||||||||  | ||    | |||||||||||||||| ||||||||||| | |     
T  7046809 taatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgt 7046908  T
Q  401 caacttcacccatttcttctcccttgcattaagcttaaaca 441  Q
     ||||||||||| ||||||||| |  |||||||||||||||    
T  7046909 taacttcacccacttcttctccttctcattaagcttaaaca 7046949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 7029847 - 7029938
Alignment:
Q  365 caaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacac 456  Q
    ||||||||||||||||||  ||||||| ||| | | |||||||||||| ||||||||| |  |||||||||||||||  |||||||||||||    
T  7029847 caaccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacac 7029938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 7046587 - 7046647
Alignment:
Q  97 aaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataaca 157  Q
    |||||||||| | |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  7046587 aaattaagcatagtaaagctatatcactatcacattagaaacctttcaatgcaagataaca 7046647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 213431 - 213349
Alignment:
Q  97 aaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactctgttactaattcagctt 179  Q
    ||||||||||  |||||| ||||||| ||| |||| ||| | ||||||||||||||||||||||||  |||| ||||||||||    
T  213431 aaattaagcaagataaagatatatcacaataacatgagagacctttcaatgcaagataacatactcacttacgaattcagctt 213349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 9170851 - 9170941
Alignment:
Q  365 caaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 455  Q
    ||||||||||||||||||  ||||||||||| | |  || |||||||| ||||||||| |  |||||||||||||||  ||||||||||||    
T  9170851 caaccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 9170941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 455
Target Start/End: Original strand, 7012788 - 7012944
Alignment:
Q  305 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaac------cccaagaacaaaactatatcccctaaatta 398  Q
    ||||||| |||||||||||| ||||||||||||| ||||| | ||||||||  | || | ||||      |||||||||||||   |||| |||||| |     
T  7012788 gatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaaactt 7012887  T
Q  399 gccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 455  Q
    | |||||||||||| ||||||||| |  |||||||||||||||  ||||| ||||||    
T  7012888 gtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttaca 7012944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 455
Target Start/End: Complemental strand, 9159643 - 9159487
Alignment:
Q  305 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat-----taccagaac-aaccccaagaacaaaactatatcccctaaatta 398  Q
    ||||| |||||||||||||| ||||||||||||  |||||||| |||||||      |||||   | |||||||||||||||||  ||||||||||| |     
T  9159643 gatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaactc 9159544  T
Q  399 gccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 455  Q
    |  || |||||||| ||||||||| |  | |||||||||||||  ||||||||||||    
T  9159543 gttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttaca 9159487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 41985602 - 41985719
Alignment:
Q  305 gatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaac 404  Q
    |||||||||||| ||||||  |||| |||||||| ||||||||||||||||  | ||      |||||||||||||||| ||||||||||| | ||||||    
T  41985602 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 41985701  T
Q  405 ttcacccatttcttctcc 422  Q
    || |||||||||||||||    
T  41985702 ttgacccatttcttctcc 41985719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 9626847 - 9626768
Alignment:
Q  83 caatcttacaacaaaaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactc 162  Q
    |||||| |||||| |||||||||||||||| || |||| | |||||||||||||| ||||||||| | ||||||||||||    
T  9626847 caatctaacaacataaattaagcacaataatgcaatatgacaatcacattagaaacctttcaatgtaggataacatactc 9626768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 9617610 - 9617489
Alignment:
Q  300 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaa-gaacaaaactatatcccctaaatta 398  Q
    |||| |||||||||||||||||||| ||||||||||||  ||||||||||||||||| | ||   ||  | ||| |||||||||  |||||||||||||     
T  9617610 ataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaaca-tccattcacaaggaacaaaaccctatcccctaaattt 9617512  T
Q  399 gccaacttcacccatttcttctc 421  Q
      |||||||||||||||||||||    
T  9617511 ttcaacttcacccatttcttctc 9617489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 453
Target Start/End: Original strand, 9448307 - 9448436
Alignment:
Q  324 ggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctccc 423  Q
    |||| |||||||||| ||||||||||||||||  | |||     |||||||||||||||  ||||||||||| | |  |||||||||||||||||||||     
T  9448307 ggaagacacaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctcct 9448406  T
Q  424 ttgcattaagcttaaacacgtcaatcctta 453  Q
    |  ||| |||||||||||| |||| |||||    
T  9448407 tctcataaagcttaaacacatcaaccctta 9448436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 453
Target Start/End: Original strand, 9343823 - 9343967
Alignment:
Q  309 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttca 408  Q
    |||||||| ||| | ||||||||||||||| ||||||||||||||||  | ||      |||||||||||||||  ||||||||||| | |  |||||||    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  409 cccatttcttctcccttgcattaagcttaaacacgtcaatcctta 453  Q
    |||| ||||||||| |  ||| |||||||||||| |||| |||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaaccctta 9343967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 9425542 - 9425598
Alignment:
Q  300 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 356  Q
    |||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9425542 ataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaat 9425598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 9495171 - 9495100
Alignment:
Q  111 aaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactctgttactaattcagcttctt 182  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||||||||| ||||   ||||||||||||    
T  9495171 aaagctatatcacaatcacattaaaaagcttttaatgcaagataacatactcagttatgcattcagcttctt 9495100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 9357141 - 9357197
Alignment:
Q  105 cacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatact 161  Q
    ||||| ||||| |||||| ||||||||||||||| | ||||||||||||||||||||    
T  9357141 cacaagaaagcaatatcacaatcacattagaaatttctcaatgcaagataacatact 9357197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 9397762 - 9397810
Alignment:
Q  308 gacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 356  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  9397762 gacacaattccctttggcaacacacaaatccaaagctgaagcggaaaat 9397810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 9407343 - 9407391
Alignment:
Q  308 gacacaattccctttgggaacacacaaatccaaagcagaagcagaaaat 356  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9407343 gacacaattccctttggcaacacacaaatccgaagctgaagcagaaaat 9407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 9494955 - 9494900
Alignment:
Q  300 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 355  Q
    |||| |||||||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  9494955 ataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaa 9494900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 9402160 - 9402202
Alignment:
Q  119 atcaaaatcacattagaaatctttcaatgcaagataacatact 161  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  9402160 atcaaaatcacattagaaatttctcaatgcaagataacatact 9402202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 9420399 - 9420441
Alignment:
Q  119 atcaaaatcacattagaaatctttcaatgcaagataacatact 161  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  9420399 atcaaaatcacattagaaatttctcaatgcaagataacatact 9420441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 455
Target Start/End: Original strand, 9395298 - 9395383
Alignment:
Q  370 ccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 455  Q
    ||||||||||||| | ||| |||||||||| |||||||||||| || |||| | |  ||| |||| ||||||| ||||||||||||    
T  9395298 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 9395383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 41980891 - 41980944
Alignment:
Q  368 ccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctc 421  Q
    |||||||||||||||| ||||||||||| | | |||||| ||||||||||||||    
T  41980891 ccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctc 41980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 9347299 - 9347351
Alignment:
Q  105 cacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataaca 157  Q
    ||||| ||||| |||||| ||||||||||||||| | ||||||||||||||||    
T  9347299 cacaagaaagcaatatcacaatcacattagaaatttctcaatgcaagataaca 9347351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 9352870 - 9352925
Alignment:
Q  300 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 355  Q
    |||| |||||||||||| |||||||||| ||||| |||| || |||||||||||||    
T  9352870 ataaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaa 9352925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 9377055 - 9377106
Alignment:
Q  300 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcag 351  Q
    |||| |||||||||||| |||||||||| ||||| |||| ||||||||||||    
T  9377055 ataaagatgacacaatttcctttgggaagacacagatcccaagcagaagcag 9377106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 9655492 - 9655382
Alignment:
Q  312 caattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcaccc 411  Q
    ||||||||||||| ||||||||||||| |||| || ||||||||  | ||       ||||| ||||||||  |||||||||||||   |||||||||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  412 atttcttctcc 422  Q
    |||||||||||    
T  9655392 atttcttctcc 9655382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 9402335 - 9402403
Alignment:
Q  287 gaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 355  Q
    |||||| | ||| |||| ||||| |||||||||||| ||||||||||||||  | ||||| ||||||||    
T  9402335 gaagatttcatcaataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9402403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 9420574 - 9420642
Alignment:
Q  287 gaagatattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 355  Q
    |||||| | ||| |||| ||||| |||||||||||| ||||||||||||||  | ||||| ||||||||    
T  9420574 gaagatttcatcaataaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaa 9420642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 9626615 - 9626571
Alignment:
Q  312 caattccctttgggaacacacaaatccaaagcagaagcagaaaat 356  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||    
T  9626615 caattccctttggaaacacacaaatccgaagctgatgcagaaaat 9626571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 20694448 - 20694393
Alignment:
Q  300 ataatgatgacacaattccctttgggaacacacaaatccaaagcagaagcagaaaa 355  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  20694448 ataaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaa 20694393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 20694530 - 20694498
Alignment:
Q  206 aaaatattcaggataatcggacaaaggtaaaag 238  Q
    |||||||||||||||||||||||||||| ||||    
T  20694530 aaaatattcaggataatcggacaaaggtgaaag 20694498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 3650603 - 3650664
Alignment:
Q  101 taagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactc 162  Q
    |||||||||||||| |||| ||  ||||||||||||   |||||||||||||||||||||||    
T  3650603 taagcacaataaagttataccacgatcacattagaatattttcaatgcaagataacatactc 3650664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 450458 - 450419
Alignment:
Q  128 acattagaaatctttcaatgcaagataacatactctgtta 167  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  450458 acattagaaacctttcaatgcaagagaacatactctgtta 450419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 3706934 - 3706873
Alignment:
Q  101 taagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactc 162  Q
    |||||||| ||||| |||| ||  ||||||||||||   |||||||||||||||||||||||    
T  3706934 taagcacagtaaagttataccacgatcacattagaatattttcaatgcaagataacatactc 3706873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 18571068 - 18571124
Alignment:
Q  291 atattatccataatgatgacacaattccctttgggaacacacaaatccaaagcagaa 347  Q
    ||||||| |||||  || |||||||||||||||| ||||||||||||| ||||||||    
T  18571068 atattattcataaaaatcacacaattccctttggaaacacacaaatccgaagcagaa 18571124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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