View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_13 (Length: 522)
Name: NF15927_low_13
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_13 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 4 - 522
Target Start/End: Complemental strand, 12635729 - 12635212
Alignment:
| Q |
4 |
caatattggatagtgattatatttgagagaggaaagaagataaattaataaggatttctcttggtaggaaattgaagatgattttgggcgccaatgtatg |
103 |
Q |
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| T |
12635729 |
caatattggatagtgattatatttgagagaggaaagaagataaattaataaggatt-ctcttggtaggaaattgaagatgattttgggcgccaatgtatg |
12635631 |
T |
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| Q |
104 |
gtggccgttgatttcaatctatgctaatctcaaccattccatatgttataatgactggcgtgtttccaatgcagtaaataccaatgagctttgtaattac |
203 |
Q |
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| T |
12635630 |
gtggccgttgatttcaatctatgctaatctcaaccattccatatgttataatgactggcgtgtttccaatgcagtaaataccaatgagctttgtaattac |
12635531 |
T |
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| Q |
204 |
catcataaaagcagtgctccccttcaggttccaataaacatcataccctctttccattcacttcagtaacataatagaggcccctatgtcaataaagtca |
303 |
Q |
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| T |
12635530 |
catcataaaagcagtgctccccttcaggttccaataaacatcataccctctttccattcacttcagtaacataatagaggcccctatgtcaataaagtca |
12635431 |
T |
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| Q |
304 |
ctccaagaattgtatcagtaagaagataaccagttttaacgttgcccatggttccaatgccatcaaaggtgtatctagctccgactttgaatcttttgtc |
403 |
Q |
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| T |
12635430 |
ctccaagaattgtatcagtaagaagataaccagttttaacgttgcccatggttccaatgccatcaaaggtgtatctagctccgactttgaatcttttgtc |
12635331 |
T |
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| Q |
404 |
gtgggcaagactattgtcgcatgtgcagttcacttcctctttcaatagtaatcgggtccaattcatccatctaggactttaatcgatacaggtttgaatc |
503 |
Q |
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| T |
12635330 |
gtgggcaagactattgtcgcatgtgcagttcacttcctctttcaatagtaatcgggtccaattcatccatctaggactttaatcgatacaggtttgaatc |
12635231 |
T |
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| Q |
504 |
aaaggaacaatggtttgat |
522 |
Q |
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| T |
12635230 |
aaaggaacaatagtttgat |
12635212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 435 - 522
Target Start/End: Original strand, 25432723 - 25432811
Alignment:
| Q |
435 |
acttcctctttcaatagtaatcgggtccaattcatccatctaggactttaatcgatacaggtttgaatcaaaggaa-caatggtttgat |
522 |
Q |
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| T |
25432723 |
acttcctctttcaatagtaatctggtccaattcatccatctaggactttaatcaatacaggtttcaatcacatgaatcaatggtttgat |
25432811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 38511257 - 38511200
Alignment:
| Q |
81 |
atgattttgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaacc |
138 |
Q |
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| T |
38511257 |
atgattttgggcgccaatgtttggtggccgttgatttcaatctatgctaatctcaacc |
38511200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 37222999 - 37222948
Alignment:
| Q |
86 |
tttgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaac |
137 |
Q |
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| T |
37222999 |
tttgggcgccaatgtttgatggccgttaatttcaatttatgctaatctcaac |
37222948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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