View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_16 (Length: 502)
Name: NF15927_low_16
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 37135291 - 37135758
Alignment:
| Q |
20 |
ttttacataatcgcattgaaccaatgtaaaaattaataaatagtaatcattattctcacaaattcgccgtgctaacaaacatgtgctgagtcaacaacct |
119 |
Q |
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| T |
37135291 |
ttttacataatcgcattgaaccaatgtaaaaattaataaatagtcatcattattctcacaaattcgccgtgctaacaaacatgtgctgagtcaacaacct |
37135390 |
T |
|
| Q |
120 |
taacacttgaataaagcaaaagacaaaggagtacctaggtacaaaa-taatgccattttatgtaaggatggccttatcttcccaatttggatcaacagtc |
218 |
Q |
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| T |
37135391 |
taacacttgaataaagcaaaagacaaaggagtacctaggtacaaaaataatggcattttatgtaaggatggccttatcttcccaatttggatcaacagtc |
37135490 |
T |
|
| Q |
219 |
atgggtatttttggaacttaaccctccatgaaaaggaaatatcacgtgatagtcctttctctcacacacgtgtcacatgactatcccatactcatcccca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135491 |
atgggtatttttggaacttaaccctccatgaaaaggaaatatcacgtgatagtcctttctctcacacacgtgtcacatgactatcccatactcatcccca |
37135590 |
T |
|
| Q |
319 |
aattcttggggcccatgtgtaatgccaaaccttatctctaggagagtccagatccttcctccacatagtaacactttgatctcaatcaacggtccagata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135591 |
aattcttggggcccatgtgtaatgccaaaccttatctctaggagagtccagatccttcctccacatagtaacactttgatctcaatcaacggtccagata |
37135690 |
T |
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| Q |
419 |
tagttttgaaacccatgacgtgctgaatcttttttgttaaatatctatctaaattctcatactcctatg |
487 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37135691 |
tagttttgaaacccatgacgtgctgaatc-tttttgttaaatatctatctaaattctcatactcctatg |
37135758 |
T |
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