View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15927_low_17 (Length: 483)
Name: NF15927_low_17
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 11026602 - 11026960
Alignment:
| Q |
11 |
cacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11026602 |
cacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatgaagaggaaatgaaaattcatattgatgat |
11026701 |
T |
|
| Q |
111 |
gaaggggatgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11026702 |
gaaggggatgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcaga |
11026801 |
T |
|
| Q |
211 |
tgttggaggaaaatatagataaaactccaatacctcccaatccttttgattcccaatctagacaacctaggaggactgatgcaactgcaactactagaca |
310 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11026802 |
tgttggaggaaaatatagacaaaactccaatacctcccaatccttttgattcccaatctagacaacctaggaggactgatgcaactgcaactactagaca |
11026901 |
T |
|
| Q |
311 |
agtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatata |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11026902 |
agtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatata |
11026960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 10993146 - 10993503
Alignment:
| Q |
11 |
cacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgat |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||| ||| |
|
|
| T |
10993146 |
cacagaggatttagaggaaaacagtagtcatgtttactatccggaatggatttataaacttatagatgatgaagaggaaatgagaattcatgttgacgat |
10993245 |
T |
|
| Q |
111 |
gaaggggatgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcaga |
210 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10993246 |
gaaggggatgaaaaagttgcaaggaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccaacaatgcaaatggtggttcaga |
10993345 |
T |
|
| Q |
211 |
tgttggaggaaaatatagataaaactccaatacctcccaatccttttgattcccaatctagacaacctaggaggactgatgcaactgcaactactagaca |
310 |
Q |
| |
|
||||||||| | || |||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| | || || | ||||| ||||||||| |
|
|
| T |
10993346 |
tgttggagggagatgtagacaaaactccaatacctcccaatccatttgcttctcaatctagacaacctaggagaaatggtggagttgcaattactagaca |
10993445 |
T |
|
| Q |
311 |
agtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatat |
368 |
Q |
| |
|
| | || || | |||||||||||||||||| | || |||||||||||||| |||||| |
|
|
| T |
10993446 |
actcactcaagagttagatgtaattcaagagttggaatgacttacaattgtaaaatat |
10993503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 10907060 - 10907415
Alignment:
| Q |
12 |
acagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
10907060 |
acagaggacttagaggaaaacagtag-catgtttactatccggagtggattgataatcttatagatgatcaagacgaaatgagaattcatgttgatgatg |
10907158 |
T |
|
| Q |
112 |
aaggggatgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagat |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10907159 |
aaggggatgaaaaaattgcaaggaaaatggcaattgtgggactctggtgcatttagtggcatgctatggatcgaccatcaatgcaaatggtggttcaaat |
10907258 |
T |
|
| Q |
212 |
gttggaggaaaatatagataaaactccaatacctcccaatccttttgattcccaatctagacaacctaggaggactgatgcaactgcaactactagacaa |
311 |
Q |
| |
|
|||||||| | || | || |||||||||||||||||||||||||||| ||| ||||||||||| |||||||| | || || | || ||| |||||||||| |
|
|
| T |
10907259 |
gttggagggagatgtcgacaaaactccaatacctcccaatccttttgcttctcaatctagacagcctaggagaaatggtggagctacaattactagacaa |
10907358 |
T |
|
| Q |
312 |
gtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatat |
368 |
Q |
| |
|
|||| || | |||||||||||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
10907359 |
ctaactcaagagttagatgtaattcaagagttagaatgacttacaattgtaaaatat |
10907415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 10930943 - 10931299
Alignment:
| Q |
12 |
acagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||| |||| |
|
|
| T |
10930943 |
acagaggacttagaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatcaagaggaaatgagaatacaggttgacgatg |
10931042 |
T |
|
| Q |
112 |
aaggggatgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagat |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
10931043 |
aaggggatgaaaaaattgcaaggaaaatggccattgtgggattatggtgcattcagtggcatgctatgcatcgaccaacaatgcaaatggtggttcagat |
10931142 |
T |
|
| Q |
212 |
gttggaggaaaatatagataaaactccaatacctcccaatccttttgattcccaatctagacaacctaggaggactgatgcaactgcaactactagacaa |
311 |
Q |
| |
|
|||||||| | || | || ||||||||||||||||| |||||||||| ||| |||||||||||||||||||| | || | | || || |||||||||| |
|
|
| T |
10931143 |
gttggagggagatgtcgacaaaactccaatacctccaaatccttttgcttctcaatctagacaacctaggagaaatggcggagctaaaattactagacaa |
10931242 |
T |
|
| Q |
312 |
gtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatat |
368 |
Q |
| |
|
|||| || | || ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10931243 |
ctaactcaagagttggatgtaattcaagagttagattgacttacaattgtaaaatat |
10931299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 11041305 - 11041662
Alignment:
| Q |
11 |
cacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgat |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
11041305 |
cacagaggatttagaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatgaagaggaaatgagaattcatgttgatgat |
11041404 |
T |
|
| Q |
111 |
gaaggggatgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcaga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11041405 |
gaaggggatgaaaaaattgcaagaaaaatggccatcgtgggactttggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcaaa |
11041504 |
T |
|
| Q |
211 |
tgttggaggaaaatatagataaaactccaatacctcccaatccttttgattcccaatctagacaacctaggaggactgatgcaactgcaactactagaca |
310 |
Q |
| |
|
||||||||| | || ||| ||||||||||||||||| ||||| |||| ||| |||||||||| ||||||| | | ||||| ||||||||| |||| |
|
|
| T |
11041505 |
tgttggagggagatgaagacaaaactccaatacctccaaatccctttgcttctcaatctagacggcctaggaaaaatagtgcaattgcaactacgggaca |
11041604 |
T |
|
| Q |
311 |
agtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatat |
368 |
Q |
| |
|
|| | || |||||||||| ||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
11041605 |
tctagcacaagatttagatgtgattcacgagttagattgacttgaaattgtgaaatat |
11041662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 406 - 464
Target Start/End: Original strand, 11026998 - 11027056
Alignment:
| Q |
406 |
tcaatcaaattgacattagaatagcaccaaattaagtaaatgctaaagtggaggagctt |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11026998 |
tcaatcaaattgacattagaatagcaccaaattaagtaaatgctaaagtggaggagctt |
11027056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 9300602 - 9300649
Alignment:
| Q |
125 |
aattgcaagaaaaatggccattgtgggactatggtgcattcagtggca |
172 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
9300602 |
aattgcaaaaaaaatggcaattgtgggattatggtgcattcagtggca |
9300649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 8962828 - 8962896
Alignment:
| Q |
144 |
attgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatg |
212 |
Q |
| |
|
||||| ||||| |||||||||||||||||| | || |||||||| | ||| |||||||||| |||||| |
|
|
| T |
8962828 |
attgtcggactttggtgcattcagtggcattcagtgcatcgaccagccatgaaaatggtggtgcagatg |
8962896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University