View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_18 (Length: 472)
Name: NF15927_low_18
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_18 |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 6346676 - 6347130
Alignment:
| Q |
1 |
attcaagaaaagaaaatgttagcaatagtatatttaataacttcaaagtagaagagttaccaa-taaaaaggagaaacatagcaagttaacgttttagta |
99 |
Q |
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| T |
6346676 |
attcaagaaaataaaatgttagcaatagtatatttaataacttgaatgtagaagagttaccaaataaaaaagagaaacatagcaagttaatgttttagta |
6346775 |
T |
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| Q |
100 |
gtgaattatgagctgagaattgaacttattaaccttgttgaagttgaattgaacacggtcgcatttactgctgtagttccttgtgccattgttcctctta |
199 |
Q |
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| T |
6346776 |
gtgaattatgagctgagaattgaactaatttaccttgttgaagttgaattgaacacggttgcatatgatgttgtggttccttgtgccattgttcctctta |
6346875 |
T |
|
| Q |
200 |
ctgtgagctcaacactaacttcagtattgttatgaagcatggcatccatggaaggaatagagaaaagcttgtattgatagtaatgagaaagtatattaca |
299 |
Q |
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| T |
6346876 |
ctgtgagctcaacacaaatttcagtattgttatgaagcatggcatccatggaaggaaaagagaaaagcttgtattgatagtaatgagaaagtatattaca |
6346975 |
T |
|
| Q |
300 |
aaatgagaaattaaagttggttacaatgtgacactttaaacctatttatacaagacttaaggtttgtattgcagtggactgtctttgttgaagaaaaagc |
399 |
Q |
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| T |
6346976 |
aaatgagaaattaaagttggttacaatgtgacagcttaaacctatttatacaagacttaaggtttgtattacattggactgtctttgttgaagaaaaagc |
6347075 |
T |
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| Q |
400 |
atagaaaaagagctttgacataatttgggttaactcatgtgatagtgacccataa |
454 |
Q |
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| T |
6347076 |
atagaaaaagagctttgacataatttgggttaactcatgtgatagtgacccataa |
6347130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 299 - 454
Target Start/End: Original strand, 6330494 - 6330652
Alignment:
| Q |
299 |
aaaatgagaaattaaagttggttacaatgtgacactttaaacctatttatacaagacttaaggtttgtattgc--agtggactgtctttgttgaagaaaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
6330494 |
aaaatgagaaattaaagttggttacaatgtgacaccttaaacctatttttatatgacttaaggtttgtattgcatattggtctgtctttgttgaagaaaa |
6330593 |
T |
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| Q |
397 |
agcatagaaaaagagctttga----cataatttgggttaactcatgtgatagtgacccataa |
454 |
Q |
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| T |
6330594 |
agaatagaaaaagagctttaataataataatttgggttaac---tgtgatagtgacccataa |
6330652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 223 - 176
Alignment:
| Q |
382 |
ctttgttgaagaaaaagcatagaaaaagagctttgacataatttgggt |
429 |
Q |
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| T |
223 |
ctttgttgaagaaaaaacatagataaagagatttgatataatttgggt |
176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 5690899 - 5690866
Alignment:
| Q |
224 |
tattgttatgaagcatggcatccatggaaggaat |
257 |
Q |
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| T |
5690899 |
tattgttatgaaacatggcatccatggaaggaat |
5690866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 2427281 - 2427244
Alignment:
| Q |
312 |
aaagttggttacaatgtgacactttaaacctatttata |
349 |
Q |
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| T |
2427281 |
aaagttggttacaatgtgacaccttaagcctatttata |
2427244 |
T |
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