View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_19 (Length: 466)
Name: NF15927_low_19
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 43030008 - 43029751
Alignment:
| Q |
1 |
ctttaaagggtcatcagtgattgaagatttccaagcttgaagagctttgtaggcattgtttagatttgacacagatgatcctgaagatcctgggatgtta |
100 |
Q |
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| T |
43030008 |
ctttaaagggtcatcagtgattgaagatttccaagcttgaagagctttgtaggcattgtttagatttgacacagatgatcctgaagatcctgggatgtta |
43029909 |
T |
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| Q |
101 |
ggaccatcattgccattgccaatgccaattccaatgccaacaccaacaccaatgcctataccaatggcagcttttgctgcatctgggagaaggagaagaa |
200 |
Q |
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| T |
43029908 |
ggaccatcattgccattgccaatgccaatgccaatgccaaca------ccaatggctataccaatggcagcttttgctggatttgggagaaggagaagaa |
43029815 |
T |
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| Q |
201 |
ggaggtggagaaaagacagaatcatggtcttctccattttgggatgtagatacagaatgattct |
264 |
Q |
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| T |
43029814 |
ggaggtggagaaaagacagaatcatggtcttctccattttgggatgtagatacagaatgattct |
43029751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 324 - 451
Target Start/End: Complemental strand, 43029691 - 43029564
Alignment:
| Q |
324 |
cactcacttgctggaagacagacagatagtcacagagtgatggattgatggggccaattggttttaaaaagtgtcatgttttctcatttgtcactttctc |
423 |
Q |
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| T |
43029691 |
cactcacttgctggaagacagacagatagtcacagagtgatggattgatggggccaattggtttttaaaagtgtcatgttttctcatttgtcactttctc |
43029592 |
T |
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| Q |
424 |
tttggtttatataatgttaatgcctttg |
451 |
Q |
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| T |
43029591 |
tttggtttatgtaatgttaatgcctttg |
43029564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34201748 - 34201790
Alignment:
| Q |
1 |
ctttaaagggtcatcagtgattgaagatttccaagcttgaaga |
43 |
Q |
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| T |
34201748 |
ctttaaagggtcatcagtgattgcagatttccatgcttgaaga |
34201790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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