View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_2 (Length: 775)
Name: NF15927_low_2
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 24493643 - 24493177
Alignment:
| Q |
1 |
taggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493643 |
taggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaa |
24493544 |
T |
|
| Q |
101 |
ttcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493543 |
ttcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaa |
24493444 |
T |
|
| Q |
201 |
ggagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24493443 |
ggagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggaaaagatattagggagtgggagcc |
24493344 |
T |
|
| Q |
301 |
acggatgttgggaagtgggcagtaatggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatg |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493343 |
acggatgttgggaagtgagcagtaatggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatg |
24493244 |
T |
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| Q |
401 |
cactcttcgagtggctcggtctagacaaatgtaagagtgatattgtgtagaataaccaaggaaaaca |
467 |
Q |
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| T |
24493243 |
cactcttcgagtggctcggtctagacaaatataagagtgatattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 58 - 467
Target Start/End: Complemental strand, 92951 - 92542
Alignment:
| Q |
58 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92951 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaatattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
92852 |
T |
|
| Q |
158 |
aagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggtt |
257 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92851 |
aagcgtgagtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggtttggttgatggaggtgtggttgaattatggattatggtttctgaggtt |
92752 |
T |
|
| Q |
258 |
ctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggtttgggggttttgatgggaga |
357 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92751 |
ctaggctgatgtgggtgggttaagatattagggagtgggagccacggatgttggggagtgggcagtaatggaggtgaggtttgggggttttgatgggaga |
92652 |
T |
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| Q |
358 |
aaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtgatattgtgtagaataacc |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
92651 |
aaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaagagtgatattgtgtagaataacc |
92552 |
T |
|
| Q |
458 |
aaggaaaaca |
467 |
Q |
| |
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||| |||||| |
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| T |
92551 |
aagtaaaaca |
92542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 461 - 759
Target Start/End: Complemental strand, 22684888 - 22684590
Alignment:
| Q |
461 |
gaaaacaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttat |
560 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22684888 |
gaaatcaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttgttttat |
22684789 |
T |
|
| Q |
561 |
ttataggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
660 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684788 |
ttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
22684689 |
T |
|
| Q |
661 |
atgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatt |
759 |
Q |
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| T |
22684688 |
atgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatt |
22684590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 498 - 747
Target Start/End: Complemental strand, 22696146 - 22695900
Alignment:
| Q |
498 |
ctttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttataggttgtgactcctttggcaaaaattgccttaa |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttattttacatataggttgtgactcctctggcaaaatatgccttaa |
22696047 |
T |
|
| Q |
598 |
tattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgctatgtctctttttatcagaacaactttagtgtt |
697 |
Q |
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| T |
22696046 |
cattattgcctattgcatcaagcatagaggaactt---gtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggt |
22695950 |
T |
|
| Q |
698 |
ttcaagtttatttgtggccctctcttttccatattttggtaagtattgtc |
747 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
22695949 |
ttcaagtttagttgtggccctctcttttccatattttggtaagttttgtc |
22695900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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