View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_20 (Length: 463)
Name: NF15927_low_20
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 214 - 442
Target Start/End: Original strand, 9411795 - 9412026
Alignment:
| Q |
214 |
cagaatccaagagtattctacaaacactcatgcaacaaaatacacaaaaaaggtctaacaccaaaa---------ctcataagccaaaatccagtatcta |
304 |
Q |
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| T |
9411795 |
cagaatccaagagtatactacaaacactcatgcaacaaaatatacaaaaagggtctaacaccaaaactcataaaactcataagccaaaatccagtatcta |
9411894 |
T |
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| Q |
305 |
tatctatctcagtaccctacaccctagaaccatatccattaccatttgttccattcaatacttgcaacttgttctctgatttcttcctcttgatcacaat |
404 |
Q |
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| T |
9411895 |
tatctatctcagtatcctacaccctagaaccatatccattaccatttgttccattcattccttgcaacttgttctctgatttcttcctcttgatca---- |
9411990 |
T |
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| Q |
405 |
gtcaatgatccatgtgtaagcttccaaaagtacagcaa |
442 |
Q |
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| T |
9411991 |
--caatgatccatgtgtaagcttccaaaagtacagcaa |
9412026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 25123838 - 25123953
Alignment:
| Q |
11 |
cacagatacaaccttacctctctcttttttccttcttttattattcatcaaatctatatacatatctagaaggttatatccatctacaaagaaaaggcta |
110 |
Q |
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| T |
25123838 |
cacagatacaaccttacgtctctcttttttccttcttttattattcatcaaatctatatacatatctagaaggttatatccatctacaaagaaaaggcta |
25123937 |
T |
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| Q |
111 |
ctacagcagatataag |
126 |
Q |
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| T |
25123938 |
ctacaacagatataag |
25123953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 808977 - 808863
Alignment:
| Q |
11 |
cacagatacaaccttacctctctcttttttccttcttttattattcatcaaatctatatacatatctagaaggttatatccatctacaaagaaaaggcta |
110 |
Q |
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| T |
808977 |
cacagatacaaccttacctctct-ttttttccttcttttattattcatcaaacctatatacatatctagaaggtcatatccatctacaaagaaaaggcta |
808879 |
T |
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| Q |
111 |
ctacagcagatataag |
126 |
Q |
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| T |
808878 |
ctacaacagatataag |
808863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 807728 - 807644
Alignment:
| Q |
129 |
aatgttaatcatacaccaaatctttttgatatatggcaaatagctatacagtatatttctcagtctatataatgtaagtaacatcca |
215 |
Q |
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| T |
807728 |
aatgttaatcatacacaaaatcttgttgatat--ggcaactaggtatacaatatatttatcaatctatataaattaagtaacatcca |
807644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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