View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_21 (Length: 457)
Name: NF15927_low_21
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34984926 - 34985168
Alignment:
| Q |
1 |
tctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34984926 |
tctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacct |
34985025 |
T |
|
| Q |
101 |
agttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34985026 |
agttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtttttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaaga |
34985125 |
T |
|
| Q |
201 |
taagtccaactaaactagttgaattacttatggatgtggtaag |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34985126 |
taagtccaactaaactagttgaattacttatggatgtggtaag |
34985168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 27542709 - 27542478
Alignment:
| Q |
12 |
ttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgattt |
111 |
Q |
| |
|
||||| |||||||||||| ||| | ||||||||||||||| |||||||| || |||||||||||||||||| || |||||||||||||||||||||| |
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| T |
27542709 |
ttgaaaatttgaaacaatatggtcgggttgatgcaacattaatggagattaataggttggttgaagttggagaattttaaactttacctagttttgattt |
27542610 |
T |
|
| Q |
112 |
gtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaact |
211 |
Q |
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|||||||||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |
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| T |
27542609 |
gtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgcagattgaagcttttcggaacatggcattgattaagataagtccaact |
27542510 |
T |
|
| Q |
212 |
aaactagttgaattacttatggatgtggtaag |
243 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |
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| T |
27542509 |
aaactagttgaaatacttatggatgtggtaag |
27542478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 27581611 - 27581371
Alignment:
| Q |
1 |
tctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacct |
100 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| | ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
27581611 |
tctccatgatattgaatatttgaaacaatttggtcgggttgatgcaacattaatggagattattaggttggttgaagttggagagcttcaaactttacct |
27581512 |
T |
|
| Q |
101 |
agttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaaga |
200 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||| ||||||||||| | || ||||||||| |||||||||| || |||||| ||||||| |||||| |
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| T |
27581511 |
agttttgatttgtg--aaaatcaaaatccaatgtacacaatggaagtttctggacaaggtttatagattgaagcctcgtgggacatggcattggttaaga |
27581414 |
T |
|
| Q |
201 |
taagtccaactaaactagttgaattacttatggatgtggtaag |
243 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27581413 |
taattccaactaaactagttgaattacttatggatgtggtaag |
27581371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 276 - 434
Target Start/End: Original strand, 34985201 - 34985359
Alignment:
| Q |
276 |
gtcacgttgtgtatacacttttactaaattgttatagtgcaatcaaggtttaaaatctcatattacggtgacaattgcaaccgtaattttttaattgtcg |
375 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
34985201 |
gtcacgttgtgtatacagttttagtgaattgttatagtgcaatcaaggtttaaaatctcatattacggtgacaatttcaactgtaattttttaattgtcg |
34985300 |
T |
|
| Q |
376 |
tcaactgttctttatgcgaagacattagaaacattgatgacacgatttagatcaactta |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34985301 |
tcaactgttctttatgcgaagacattagaaacattgatgacacgatttagatcaactta |
34985359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27582993 - 27583237
Alignment:
| Q |
1 |
tctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacct |
100 |
Q |
| |
|
||||||| || || ||||||||||||||||||| | ||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
27582993 |
tctcgataatatttaatatttgaaacaatttggtcgggttgatgcaacatcaatggagattgttaggttggttggagttggagagcttcaaactttacct |
27583092 |
T |
|
| Q |
101 |
agttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggca--ttgattaa |
198 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||||||||| | |||| |||||||||| ||||||||||||||| |||| |||| |||||||| |
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| T |
27583093 |
agttttaatttgtgtcgaaaccaaaatccaatgtacacaatggaaatttttggacaaggtttgttgattgaagcttctcgagacatggcatgttgattaa |
27583192 |
T |
|
| Q |
199 |
gataagtccaactaaactagttgaattacttatggatgtggtaag |
243 |
Q |
| |
|
||| || |||||||||||| |||||||||||||||||||||||| |
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| T |
27583193 |
tatatgttcaactaaactagatgaattacttatggatgtggtaag |
27583237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27543669 - 27543896
Alignment:
| Q |
1 |
tctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacct |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27543669 |
tctcgatgatattgaatatttgaaacaatttggttgggttgatgcaacattaatggagattgttaggttgcttggagttggagagcttcaaactttacct |
27543768 |
T |
|
| Q |
101 |
agttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||| |||||||||||||||||||||| |||| | |
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|
| T |
27543769 |
agttttgatttgtgtcgaaaccaaaatccaatgtacacaatggaagtttttggacatggtttgcagattgaagcttctcaggac---------------a |
27543853 |
T |
|
| Q |
201 |
taagtccaactaaactagttgaattacttatggatgtggtaag |
243 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27543854 |
tatgtccaactaaactagttgaattacttatggatgtggtaag |
27543896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 34980490 - 34980717
Alignment:
| Q |
12 |
ttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgattt |
111 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| | ||| | | ||||||||| |||||||||||||||| ||| ||||| |||||||||||||||| |
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|
| T |
34980490 |
ttgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattt |
34980589 |
T |
|
| Q |
112 |
gtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaact |
211 |
Q |
| |
|
||||||||| |||||| |||||| |||| |||||| |||| ||||||||| | |||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
34980590 |
gtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggacaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaact |
34980689 |
T |
|
| Q |
212 |
aaactagttgaattacttatggatgtgg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34980690 |
aaactagttgaattacttatggatgtgg |
34980717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34992881 - 34993123
Alignment:
| Q |
1 |
tctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacct |
100 |
Q |
| |
|
||||||| || |||||||||||||||||||| | ||||||||| ||||| ||||| |||||||| |||||||||||||||| |||||||| | ||| |
|
|
| T |
34992881 |
tctcgataatattgaatatttgaaacaatttagtcaggttgatgcatcattaatggagcttgttaagatggttgaagttggagatcttcaaacactgcct |
34992980 |
T |
|
| Q |
101 |
agttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtctttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaaga |
200 |
Q |
| |
|
|||||||||| |||||||| |||| || |||||| |||| ||| || |||| |||||||||||||||||||| ||| ||||| | |||||||||||||| |
|
|
| T |
34992981 |
agttttgattcgtgtcgaatccaagatccaatgtcaacaaaggacgtttttggacaaggtttgcagattgaaggttcacgggatatggcattgattaaga |
34993080 |
T |
|
| Q |
201 |
taagtccaactaaactagttgaattacttatggatgtggtaag |
243 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
34993081 |
taagtccaactaaactagttgaagtacttatggatctggtaag |
34993123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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