View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_25 (Length: 427)
Name: NF15927_low_25
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 41948169 - 41947872
Alignment:
| Q |
4 |
ataatctttttccaaatacaatacaaaacttgtagttttcacttttgcccactcaatccattaagctatcccgtgattcaagcacatcccacttctttnn |
103 |
Q |
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| T |
41948169 |
ataatctttttccaaatacaatacaaaacttgtagttttcacttttgcccactcaatccattaagctatcccgtgattcaagcaaatcccactt----ta |
41948074 |
T |
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| Q |
104 |
nnnnnnnncttcacaaactatacttttaaataatgccttaaaattttaaactatgttgatgtatgacaaaatactgtcgagttccatgaatcgaagcatt |
203 |
Q |
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| T |
41948073 |
aaaaaaaacttcacaaactatacttttaaataatgccttaaaattttaaactatgttgatgtatgacaaaatactgtcgagttccatgaatcgaagcatt |
41947974 |
T |
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| Q |
204 |
cttaatnnnnnnnctataaagatgactagattttggtctacaattaaaagtgactagaacagattagttagccgtattacaacatttgatgttgactctt |
303 |
Q |
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| T |
41947973 |
cttaataaaaaaactat-aagatgactagattttggtctacaattaaaagtgactagaacagattagttagccgtattacaacatttgatgttgactctt |
41947875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 323 - 427
Target Start/End: Complemental strand, 41947886 - 41947782
Alignment:
| Q |
323 |
atgttgactcttatattaaaaacattattatcattttttgcaacactgtatacactcatgttagaaatttattagctgggacacatagctggtaaaggtt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947886 |
atgttgactcttatattaaaaacattattatcattttttgcaacactgtatacactcatgttagaaatttattagctgggacacatagctggtaaaggtt |
41947787 |
T |
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| Q |
423 |
tttct |
427 |
Q |
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||||| |
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| T |
41947786 |
tttct |
41947782 |
T |
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