View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15927_low_27 (Length: 421)
Name: NF15927_low_27
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_27 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 23858901 - 23858661
Alignment:
| Q |
19 |
tttaggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcaccgctttgttcaacaatggtttaagctgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
23858901 |
tttaggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcactgctttgttcaacaatggtttaagctgt |
23858802 |
T |
|
| Q |
119 |
ggtgcttgttttgagataaagtgtgcaaatgacaaagagtggtgtcattctgggagtccttcaattttcattaccgctactaacttttgtcctcctaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23858801 |
ggtgcttgttttgagataaagtgtgcaaatgacaaagagtggtgtcattctgggagtccttcaattttcattactgctactaacttttgtcctcctaatt |
23858702 |
T |
|
| Q |
219 |
ttgctcaagcaagtgataatggtggttggtgtaaccctcct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23858701 |
ttgctcaagcaagtgataatggtggttggtgtaaccctcct |
23858661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 344
Target Start/End: Complemental strand, 31831798 - 31831691
Alignment:
| Q |
237 |
atggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttcctt |
336 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| |||||| | |||| ||||||| |||| | |||||||||||| |||||| || |
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|
| T |
31831798 |
atggtggttggtgtaaccctcctctccaacattttgatcttgctcaacctgtgtttcttcgaattgctcaatacaaagctggaattgttcctgttgattt |
31831699 |
T |
|
| Q |
337 |
tagaaggt |
344 |
Q |
| |
|
|||||||| |
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|
| T |
31831698 |
tagaaggt |
31831691 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 236 - 386
Target Start/End: Complemental strand, 27488678 - 27488528
Alignment:
| Q |
236 |
aatggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttcct |
335 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27488678 |
aatggtggttggtgtaatcctcctttgcaacattttgatatggctgagcctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttcct |
27488579 |
T |
|
| Q |
336 |
ttagaaggttagtaaagtctttttgtcgcggtctttttctctgtaacgaac |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
27488578 |
ttagaaggttagtaaagtctttttgtcgcggcctttttctctgtaacgaac |
27488528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 236 - 360
Target Start/End: Complemental strand, 27477453 - 27477329
Alignment:
| Q |
236 |
aatggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttcct |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27477453 |
aatggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttcct |
27477354 |
T |
|
| Q |
336 |
ttagaaggttagtaaagtctttttg |
360 |
Q |
| |
|
||||||||||||| ||||||||||| |
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|
| T |
27477353 |
ttagaaggttagtgaagtctttttg |
27477329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 27477662 - 27477563
Alignment:
| Q |
21 |
taggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcaccgctttgttcaacaatggtttaagctgtgg |
120 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| || ||||| || ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
27477662 |
taggtggagcatgtggatatggaaatttgtatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgg |
27477563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 27488887 - 27488788
Alignment:
| Q |
21 |
taggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcaccgctttgttcaacaatggtttaagctgtgg |
120 |
Q |
| |
|
|||| ||||||||||| || |||||||| || || ||||| || ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27488887 |
taggtggagcatgtggatatggaaatttatatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgg |
27488788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 11591445 - 11591538
Alignment:
| Q |
71 |
aacacagcagcattaagcaccgctttgttcaacaatggtttaagctgtggtgcttgttttgagataaagtgtgcaaatgacaaagagtggtgtc |
164 |
Q |
| |
|
|||||||| || |||||||| ||| | ||||||| ||| ||||||||||| || |||||||||||||| |||| |||||| || ||||||||| |
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|
| T |
11591445 |
aacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttttgagataaaatgtgttaatgaccaaaagtggtgtc |
11591538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 42966137 - 42966245
Alignment:
| Q |
236 |
aatggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttcct |
335 |
Q |
| |
|
|||||||| ||||| |||||||| | || || |||||| | ||||| ||||| | | | ||||||||| |||| | |||||||||||| ||| |||||| |
|
|
| T |
42966137 |
aatggtggatggtgcaaccctccccttcagcactttgatcttgctgagcctgctttcttacaaattgctcaatacaaagctggaattgttcctatttcct |
42966236 |
T |
|
| Q |
336 |
ttagaaggt |
344 |
Q |
| |
|
| ||||||| |
|
|
| T |
42966237 |
tcagaaggt |
42966245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 42974568 - 42974676
Alignment:
| Q |
236 |
aatggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttcct |
335 |
Q |
| |
|
|||||||| ||||| |||||||| | || || |||||| | ||||| ||||| | | | ||||||||| |||| | |||||||||||| ||| |||||| |
|
|
| T |
42974568 |
aatggtggatggtgcaaccctccccttcagcactttgatcttgctgagcctgctttcttacaaattgctcaatacaaagctggaattgttcctatttcct |
42974667 |
T |
|
| Q |
336 |
ttagaaggt |
344 |
Q |
| |
|
| ||||||| |
|
|
| T |
42974668 |
tcagaaggt |
42974676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 41491277 - 41491037
Alignment:
| Q |
19 |
tttaggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcaccgctttgttcaacaatggtttaagctgt |
118 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| ||||||||||| ||||| |||||||||||||||||||| || | ||||||||||| |||| ||| |
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|
| T |
41491277 |
tttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaacaatggactaagttgt |
41491178 |
T |
|
| Q |
119 |
ggtgcttgttttgagataaagtgtgcaaatgacaaagagtggtgtcattctgggagtccttcaattttcattaccgctactaacttttgtcctcctaatt |
218 |
Q |
| |
|
||| |||||||||| | ||||||||||||||||| | |||||||| ||||| || ||||| |||||||| || ||||||||||||||||||||||| | |
|
|
| T |
41491177 |
ggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaact |
41491078 |
T |
|
| Q |
219 |
ttgctcaagcaagtgataatggtggttggtgtaaccctcct |
259 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
41491077 |
ttgctcaacctagtgacaatggtggttggtgtaaccctcct |
41491037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 34207920 - 34207688
Alignment:
| Q |
26 |
ggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcaccgctttgttcaacaatggtttaagctgtggtgctt |
125 |
Q |
| |
|
||||||||||| || |||||| |||| ||||||||||| || ||||||||||||||||||||||| || | |||||||| ||||| || ||||| | | |
|
|
| T |
34207920 |
ggagcatgtggttatggaaatctgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgt |
34207821 |
T |
|
| Q |
126 |
gttttgagataaagtgtgcaaatga-caaagagtggtgtcattctgggagtccttcaattttcattaccgctactaacttttgtcctcctaattttgctc |
224 |
Q |
| |
|
|||||||| |||||||| | ||||| | || ||||| || |||| ||||||||||| || | || ||||| || |||||||| || |||||||||| |
|
|
| T |
34207820 |
gttttgagttaaagtgttccaatgatcctag-ttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctc |
34207722 |
T |
|
| Q |
225 |
aagcaagtgataatggtggttggtgtaaccctcc |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
34207721 |
aagcaagtgataatggaggttggtgtaaccctcc |
34207688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 32000139 - 32000031
Alignment:
| Q |
236 |
aatggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttcct |
335 |
Q |
| |
|
||||||||||||||||| ||||| | ||||| ||||||||||| |||||||| | ||||||||||||| |||||| |||||||||||||||||| || | |
|
|
| T |
32000139 |
aatggtggttggtgtaatcctcccctacaacactttgatatggcagaacctgctttccttcaaattgctcaatataaagctggaattgtgcctgtatcat |
32000040 |
T |
|
| Q |
336 |
ttagaaggt |
344 |
Q |
| |
|
||||||||| |
|
|
| T |
32000039 |
ttagaaggt |
32000031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 32000348 - 32000241
Alignment:
| Q |
21 |
taggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcaccgctttgttcaacaatggtttaagctgtgg |
120 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| |||||| || ||| ||||| |||||| ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
32000348 |
taggaggtgcatgtggttatggaaatttgtacaatcaaggatatggaacaaacactgcagcactaagcacagctttgttcaacaatggtttgagctgtgg |
32000249 |
T |
|
| Q |
121 |
tgcttgtt |
128 |
Q |
| |
|
||||||| |
|
|
| T |
32000248 |
ggcttgtt |
32000241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 18301644 - 18301519
Alignment:
| Q |
19 |
tttaggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcaccgctttgttcaacaatggtttaagctgt |
118 |
Q |
| |
|
|||||| || |||||||| || ||||| | |||||||||||||| ||| ||||| || || |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
18301644 |
tttaggtggtgcatgtggatatggaaacctatacagtcaaggttatggaacaaacactgctgctttaagcacagctttgttcaacagtggtttaagctgt |
18301545 |
T |
|
| Q |
119 |
ggtgcttgttttgagataaagtgtgc |
144 |
Q |
| |
|
||| ||||||||||||| | |||||| |
|
|
| T |
18301544 |
ggttcttgttttgagattaggtgtgc |
18301519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 18301433 - 18301336
Alignment:
| Q |
236 |
aatggtggttggtgtaaccctcctttgcaacattttgatatggctgaacctgcctaccttcaaattgctgaatatagagctggaattgtgcctgtttc |
333 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||| | ||| |||||| | ||| ||||||| |||| | |||||||||||| |||||||| |
|
|
| T |
18301433 |
aatggaggatggtgtaaccctcctttacaacactttgatcttgctcaacctgtttttcttagaattgctcaatacaaagctggaattgttcctgtttc |
18301336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 22314236 - 22314154
Alignment:
| Q |
50 |
tacagtcaaggttacggagtgaacacagcagcattaagcaccgctttgttcaacaatggtttaagctgtggtgcttgttttga |
132 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||| ||||||| || | ||||||||||| ||||| ||||| || |||||||| |
|
|
| T |
22314236 |
tacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttga |
22314154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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