View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_31 (Length: 396)
Name: NF15927_low_31
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_31 |
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| [»] scaffold0151 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 162 - 378
Target Start/End: Original strand, 43471601 - 43471820
Alignment:
| Q |
162 |
taatcaggataatctaacttgnnnnnnnccagttgaaaggtcggtataaattcaacattgatgcatctttttccaagcatctgaatagtgttggaatagg |
261 |
Q |
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| T |
43471601 |
taatctggataatctaacttggaaaaaaccaattgaaagatcggtataaattcaacattgatgcatctttttccaagcatctgaatagtgttggaatagg |
43471700 |
T |
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| Q |
262 |
cgtttgtattagggatgatactggatcttttgtgctagctaaaactgagtggat-aatcccttgagagaagttattgtaggagaggctcttgg--ttttt |
358 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
43471701 |
cgtttatattagggatgatactggatcttttgtgctagctaaaactgagtggatcaatcccttgagagaagttattgtaggagaagctcttggttttttt |
43471800 |
T |
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| Q |
359 |
tatctgcattggaatgggtc |
378 |
Q |
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||||| | |||||||||||| |
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| T |
43471801 |
tatctactttggaatgggtc |
43471820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 43471397 - 43471557
Alignment:
| Q |
21 |
taaacaaaagggttagtcttccaaccatagaaatcgataaggttattgggtctaaacaccttaagccaccaccaagaattgagttttaccatgtcaacca |
120 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43471397 |
taaacaaaagggttagtcttccaagcatagaaatcgataaggtcattgcgtctaaacaccttaagccaccaccaagaattgagtttcaccatgtcaacca |
43471496 |
T |
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| Q |
121 |
tctcagtaatagatgtatgtttgttttggaaaattcgaagataatcaggataatctaacttg |
182 |
Q |
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| T |
43471497 |
t-tgagtaatagatgtatgtttgttttggaaaattcgaagataatcaggataatctaacttg |
43471557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 41451540 - 41451643
Alignment:
| Q |
50 |
gaaatcgataaggttattgggtctaaacaccttaagccaccaccaagaattgagttttaccatgtcaaccatctcagtaatagatgtatgtttgttttgg |
149 |
Q |
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| T |
41451540 |
gaaattgataaagtcattgggtctaaacaccttgagccaccaccaagaattgagtttcaccatgccaaccatttgaacaagagatgtatgcttgttatgg |
41451639 |
T |
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| Q |
150 |
aaaa |
153 |
Q |
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|||| |
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| T |
41451640 |
aaaa |
41451643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 4826822 - 4826933
Alignment:
| Q |
51 |
aaatcgataaggttattgggtctaaacaccttaagccaccaccaagaattgagttttaccatgtcaaccatctcagtaatagatgtatgtttgttttgga |
150 |
Q |
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||||||||||||| |||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||| |
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| T |
4826822 |
aaatcgataaggtcattgggtctaaacaccttaaaccacgaccaagaattgagtttcaccatgacaaccatctgagtaagagatgtatgtttgttttgga |
4826921 |
T |
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| Q |
151 |
aaattcgaagat |
162 |
Q |
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| T |
4826922 |
aaattcgaagat |
4826933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 25489625 - 25489491
Alignment:
| Q |
22 |
aaacaaaagggttagtcttccaaccatagaaatcgataaggttattgggtctaaacaccttaagccaccaccaagaattgagttttaccatgtcaaccat |
121 |
Q |
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| T |
25489625 |
aaacataagggttagtccaccatgcatgaaaatcgataaggtcattgaatctaaacaccttaagtcaccgttaagaattgagtttcaccatgtcaaccat |
25489526 |
T |
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| Q |
122 |
c--tcagtaatagatgtatgtttgttttggaaaat |
154 |
Q |
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| T |
25489525 |
ctatctgtaagaaatgtatgtttgttttggaaaat |
25489491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0151 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0151
Description:
Target: scaffold0151; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 21707 - 21675
Alignment:
| Q |
204 |
ggtataaattcaacattgatgcatctttttcca |
236 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
21707 |
ggtataaatgcaacattgatgcatctttttcca |
21675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 27862488 - 27862456
Alignment:
| Q |
204 |
ggtataaattcaacattgatgcatctttttcca |
236 |
Q |
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| T |
27862488 |
ggtataaatgcaacattgatgcatctttttcca |
27862456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 42596051 - 42596011
Alignment:
| Q |
338 |
taggagaggctcttggttttttatctgcattggaatgggtc |
378 |
Q |
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| T |
42596051 |
taggagaagcttttggttttttatctgctttggaatgggtc |
42596011 |
T |
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