View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_33 (Length: 387)
Name: NF15927_low_33
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 34390417 - 34390055
Alignment:
| Q |
12 |
taataaaaagaaatggtttggtcacattaatcaaaagaaggatcgataacaagatgaaatcttgaaactcagatgaaatattcaaatcacccttcctttc |
111 |
Q |
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| T |
34390417 |
taataaaaagaaatggtttggtcacattaatcaaaagaaggatcgataacaagatgaaatcttgaaactcagatgaaatattcaaatcacccttcctttc |
34390318 |
T |
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| Q |
112 |
atcaatatttatgaaaagat-ttccctcaacacaaaggaaactaaaagaaaatgaagttgtgatgctcacgaaagttgcaggtcggttctacaaaagaag |
210 |
Q |
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| T |
34390317 |
atcaatatttatgaaaagaacttccctcaacacaaaggaaactaaaaggaaatgaagttgtgatgctcacgaaagttgcaggtcggttctacaaaagaag |
34390218 |
T |
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| Q |
211 |
cttccataaaagaggaaagatccgggatgataatctcaagggataaagagaaggagaatgtcaccgtatctgtttgcaacaagaatatcattgttctata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34390217 |
cttccataaaagaggaaagatccgggatgataatctcaagggataaagagaaggagaatgtcaccgtatctgattgcaacaagaatatcattgttctata |
34390118 |
T |
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| Q |
311 |
agaagggagagcataaattacaacatcttactcaggggaacgagcaaaattggcttctttatg |
373 |
Q |
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| T |
34390117 |
agaagggagagcataaattacaacatcttactgaggggaacgagcaaaattggcttctctatg |
34390055 |
T |
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