View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_35 (Length: 377)
Name: NF15927_low_35
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_35 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 33199726 - 33200070
Alignment:
| Q |
16 |
atacaaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataactttattaattctatttctacttcaagnnnnnnnga |
115 |
Q |
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| T |
33199726 |
atacaaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataactttattaattctatttctacttaaagaaaaaa-ga |
33199824 |
T |
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| Q |
116 |
ggtaccacttaaaaaggattggtacatgcttgtaccacaacaagctcacagcagagtataccatcactcccacaccccaaacaatggcacccagcatctt |
215 |
Q |
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| T |
33199825 |
ggtaccacttaaaaaggattggtacatgcttgtaccacaacaagctcacagcagagtataccatcactcccacatcccaaacaatggcacccagcatctt |
33199924 |
T |
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| Q |
216 |
accattgctagtaaaatatgaaaggcaacaaactataccacatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttg-agctcacta |
314 |
Q |
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| T |
33199925 |
accattgctagtaaaatatgaaaggcaacaaactataccacatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttgaagctcacta |
33200024 |
T |
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| Q |
315 |
atgttatggatccatgttggcatcagtgtctcaatcaagtaataaa |
360 |
Q |
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| T |
33200025 |
atgttatggatccatgttggcatcagtgtctcaatcaagtaataaa |
33200070 |
T |
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Target: scaffold0186 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 4136 - 4077
Alignment:
| Q |
20 |
aaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataac |
80 |
Q |
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| T |
4136 |
aaatatcaaactaaaaact-aatttttataattttataatattaaaactcaaagttataac |
4077 |
T |
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