View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15927_low_36 (Length: 376)

Name: NF15927_low_36
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15927_low_36
NF15927_low_36
[»] chr7 (1 HSPs)
chr7 (47-361)||(1624630-1624944)
[»] chr4 (2 HSPs)
chr4 (48-228)||(6787647-6787827)
chr4 (226-356)||(6780478-6780608)
[»] chr3 (4 HSPs)
chr3 (47-227)||(26160318-26160498)
chr3 (226-343)||(26160121-26160238)
chr3 (55-163)||(10885925-10886033)
chr3 (226-330)||(10886160-10886264)
[»] chr1 (2 HSPs)
chr1 (226-356)||(45135983-45136113)
chr1 (183-228)||(45136192-45136237)
[»] chr2 (2 HSPs)
chr2 (124-228)||(28634815-28634919)
chr2 (226-337)||(28634998-28635109)
[»] chr8 (2 HSPs)
chr8 (254-330)||(43699363-43699439)
chr8 (132-209)||(43699156-43699233)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 47 - 361
Target Start/End: Original strand, 1624630 - 1624944
Alignment:
Q  47 attttgagttttcttccatggaagacttgaagaaaatcttggtagcgggttcttggaatctcaagccatgtattattcgtctctctaaatggtctccaaa 146  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1624630 attttgagttttcttccatggaagacttgaagaaaatcttgggagcgggttcttggaatctcaagccatatattattcgtctctctaaatggtctccaaa 1624729  T
Q  147 ttttagcattcacaatcataaacaaactcatgtgcaagtctgcattagattgatagatctccctcaagattattagagacattttgcaaggatcttggtt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1624730 ttttagcattcacaatcataaacaaactcatgtgcaagtctgcattagattgatagatcaccctcaagattattagagacattttgcaaggatcttggtt 1624829  T
Q  247 gatcttcacctttccaaaaggatttttaaagagattatggttgaatgtgaaggggtttccttttatgttgaaattcattatgaacgacttcttgaattat 346  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1624830 aatcttcacctttccaaaaggatttttaaagagattatggttgaatgtgaaggggtttccttttatgttgaaattcattatgaacgacttcttgaattat 1624929  T
Q  347 gtaacaattgctcat 361  Q
    |||||||||| ||||    
T  1624930 gtaacaattggtcat 1624944  T

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Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 6787827 - 6787647
Alignment:
Q  48 ttttgagttttcttccatggaagacttgaagaaaatcttggtagcgggttcttggaatctcaagccatgtattattcgtctctctaaatggtctccaaat 147  Q
    |||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||  ||    
T  6787827 ttttgagttttcttccattgaagacttgaagaaaatttgggcagcgggttcttggaatctcaagccaggtattctccgtctctctaaatggtctcctgat 6787728  T
Q  148 tttagcattcacaatcataaacaaactcatgtgcaagtctgcattagattgatagatctccctcaagattattagagacat 228  Q
     |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||    
T  6787727 cttagaattcacaaacataaacaaactcatgtgcaagtctggattagattgatagatctccctcaagaatattggagacat 6787647  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 6780608 - 6780478
Alignment:
Q  226 cattttgcaaggatcttggttgatcttcacctttccaaaaggatttttaaagagattatggttgaatgtgaaggggtttccttttatgttgaaattcatt 325  Q
    |||| ||| |||||||||||||||||| ||||||||||||| ||||||||  |||||||||||||| |||||||| |||||||||||||||||||||| |    
T  6780608 cattatgcgaggatcttggttgatcttgacctttccaaaagaatttttaattagattatggttgaacgtgaagggttttccttttatgttgaaattcaat 6780509  T
Q  326 atgaacgacttcttgaattatgtaacaattg 356  Q
    ||||||| |||| |||||  |||||||||||    
T  6780508 atgaacggcttcctgaatattgtaacaattg 6780478  T

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Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 26160498 - 26160318
Alignment:
Q  47 attttgagttttcttccatggaagacttgaagaaaatcttggtagcgggttcttggaatctcaagccatgtattattcgtctctctaaatggtctccaaa 146  Q
    |||||||||||||||| ||||||||||| |||||||||| || |||||||| ||||||||| |||||| ||||  ||||||||||||| ||||||||| |    
T  26160498 attttgagttttcttcaatggaagactttaagaaaatctaggcagcgggtttttggaatcttaagccaggtatacttcgtctctctaattggtctccaga 26160399  T
Q  147 ttttagcattcacaatcataaacaaactcatgtgcaagtctgcattagattgatagatctccctcaagattattagagaca 227  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||||||| |||| ||||||    
T  26160398 ttttagcattcacaatcataaacaaactcatgtgctagtctggattagattgatgaatctccctcaagagtattggagaca 26160318  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 26160238 - 26160121
Alignment:
Q  226 cattttgcaaggatcttggttgatcttcacctttccaaaaggatttttaaagagattatggttgaatgtgaaggggtttccttttatgttgaaattcatt 325  Q
    ||||||| ||||||||||||||||||| |||||||| |||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  26160238 cattttgtaaggatcttggttgatcttgacctttcccaaagaatttttaatgagattatggttgaacgtgaagggttttccttttatgttgaaattcatt 26160139  T
Q  326 atgaacgacttcttgaat 343  Q
    ||||||| |||| |||||    
T  26160138 atgaacggcttcgtgaat 26160121  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 10885925 - 10886033
Alignment:
Q  55 ttttcttccatggaagacttgaagaaaatcttggtagcgggttcttggaatctcaagccatgtattattcgtctctctaaatggtctccaaattttagca 154  Q
    |||||||| ||||| ||| |||||||||| | ||  || ||||| |||||||| || ||| ||||| |||| || |||||||||||| || |||| ||||    
T  10885925 ttttcttcaatggatgacatgaagaaaatttgggctgcaggttcgtggaatcttaaaccaggtattcttcgactttctaaatggtcttcagatttcagca 10886024  T
Q  155 ttcacaatc 163  Q
    |||| ||||    
T  10886025 ttcataatc 10886033  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 330
Target Start/End: Original strand, 10886160 - 10886264
Alignment:
Q  226 cattttgcaaggatcttggttgatcttcacctttccaaaaggatttttaaagagattatggttgaatgtgaaggggtttccttttatgttgaaattcatt 325  Q
    |||| ||||||||||||||||||  |  | ||||| |||||  ||||| | |||||| ||||||||||||||||  |||||||||| ||||| |||  ||    
T  10886160 cattatgcaaggatcttggttgacatggatctttcaaaaagattttttgatgagattttggttgaatgtgaaggattttccttttacgttgatattgctt 10886259  T
Q  326 atgaa 330  Q
    |||||    
T  10886260 atgaa 10886264  T

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Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 45136113 - 45135983
Alignment:
Q  226 cattttgcaaggatcttggttgatcttcacctttccaaaaggatttttaaagagattatggttgaatgtgaaggggtttccttttatgttgaaattcatt 325  Q
    |||| ||| ||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| |    
T  45136113 cattatgcgaggatcttgattgatcttgacctttccaaaagaatttttaatgagattatggttgaacgtgaagggttttccttttatgttgaagttcaat 45136014  T
Q  326 atgaacgacttcttgaattatgtaacaattg 356  Q
    | |||| ||||| |||||  |||||||||||    
T  45136013 acgaacaacttcctgaatactgtaacaattg 45135983  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 45136237 - 45136192
Alignment:
Q  183 agtctgcattagattgatagatctccctcaagattattagagacat 228  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||    
T  45136237 agtctggattagattgatagatctccctcaagaatattggagacat 45136192  T

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Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 28634815 - 28634919
Alignment:
Q  124 cgtctctctaaatggtctccaaattttagcattcacaatcataaacaaactcatgtgcaagtctgcattagattgatagatctccctcaagattattaga 223  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||  ||||||| |||||||||||| ||||||||||||| |||| ||    
T  28634815 cgtctctctaaatggtctccagattttagcattcataatcataaacaatctcatgtataagtctggattagattgataaatctccctcaagagtattgga 28634914  T
Q  224 gacat 228  Q
    |||||    
T  28634915 gacat 28634919  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 226 - 337
Target Start/End: Original strand, 28634998 - 28635109
Alignment:
Q  226 cattttgcaaggatcttggttgatcttcacctttccaaaaggatttttaaagagattatggttgaatgtgaaggggtttccttttatgttgaaattcatt 325  Q
    |||||| |||||||||| ||||||||| |||||| | || | |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||    
T  28634998 cattttacaaggatcttagttgatcttgaccttttccaatgaatttttaacgagattatggttaaatgtgaagggttttccttttatgttgaaattcgtt 28635097  T
Q  326 atgaacgacttc 337  Q
    ||||||||||||    
T  28635098 atgaacgacttc 28635109  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 43699363 - 43699439
Alignment:
Q  254 acctttccaaaaggatttttaaagagattatggttgaatgtgaaggggtttccttttatgttgaaattcattatgaa 330  Q
    |||||||||| || |||||| | |||||||||||||||||||||||  ||||||||||||||||||||  |||||||    
T  43699363 acctttccaagagaattttttatgagattatggttgaatgtgaaggattttccttttatgttgaaattgcttatgaa 43699439  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 43699156 - 43699233
Alignment:
Q  132 taaatggtctccaaattttagcattcacaatcataaacaaactcatgtgcaagtctgcattagattgatagatctccc 209  Q
    |||||||||| || |||||||||||||||| || ||  |||||||||| ||||| || ||||||||||||||||||||    
T  43699156 taaatggtctacagattttagcattcacaaacagaagtaaactcatgttcaagtatggattagattgatagatctccc 43699233  T

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