View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_37 (Length: 373)
Name: NF15927_low_37
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 18525679 - 18526021
Alignment:
| Q |
13 |
agcaaaggtactttcaaggaataaatgagatagagtttcttggcttttaccac-aaggaaaacaaactaagggaaaggagcatcccctcttcacaagaat |
111 |
Q |
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| T |
18525679 |
agcaaaagtactttcaaggaataaatgagatagagtttcttggattttactgctaaagaaaacaaactgagggaaatgagcatcccctctttgcaagaat |
18525778 |
T |
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| Q |
112 |
ttcatcagtaggaacctttttgagaaggattctccaaacaaggagagacttagaaggaggaattgcagtatcccaaataacctttagcccagctgatatt |
211 |
Q |
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| T |
18525779 |
atcatcagtaggaacctttttgagaaggattctccaaaccaggagagacttagaaggaggaattgcagtattccaaataacctt-agcccagatgatatt |
18525877 |
T |
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| Q |
212 |
ttgagattgaggtgaggtctgaaatatgaatgcatctttaaatgataggttaccatcatgagattgcttccaaataagcttatcctccttataagtgtta |
311 |
Q |
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| T |
18525878 |
ttgagattgaggtgaggtctgaaatatgaatgcatctttaaatgataggttaccatcatgagattgcttccaaataagcttatcctccttgtaagtgtta |
18525977 |
T |
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| Q |
312 |
ggaattgacaccaacttcaatttttgctgaagaattgggcaagc |
355 |
Q |
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| T |
18525978 |
ggaattgacaccaacttcaatttttgctgaagaattgggcaagc |
18526021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 38359726 - 38359646
Alignment:
| Q |
241 |
atgcatctttaaatgataggttaccatcatgagattgcttccaaataagcttatcctccttataagtgttaggaattgaca |
321 |
Q |
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| T |
38359726 |
atgcatctttaaaggagagacttccatcatgagatggcttccaaatcagcttatcttccttgtaagaattaggaatggaca |
38359646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 25270689 - 25270758
Alignment:
| Q |
229 |
tctgaaatatgaatgcatctttaaatgataggttaccatcatgagattgcttccaaataagcttatcctc |
298 |
Q |
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| T |
25270689 |
tctgaaatatataagcatctttgaatgataaattcccatcatgagatttcttccaaatgagcttgtcctc |
25270758 |
T |
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