View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_39 (Length: 358)
Name: NF15927_low_39
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 42124033 - 42124069
Alignment:
| Q |
12 |
tgaacaagttttgagagaggttcaaaaatagccatga |
48 |
Q |
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| T |
42124033 |
tgaacaagttttgagagaggttcaaaaatagcaatga |
42124069 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 32003352 - 32003416
Alignment:
| Q |
115 |
aaaccttttctaaatatcagtcgtaaagttttatttacaaaataaactaaatgatccttttcaaaa |
180 |
Q |
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| T |
32003352 |
aaacctttt-taaacataagtcgtaaacttttattaacaaaataaattaaaggttccttttcaaaa |
32003416 |
T |
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