View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15927_low_4 (Length: 705)

Name: NF15927_low_4
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15927_low_4
NF15927_low_4
[»] chr2 (33 HSPs)
chr2 (17-540)||(41299197-41299736)
chr2 (539-689)||(5723103-5723253)
chr2 (539-689)||(36205512-36205662)
chr2 (539-689)||(45099925-45100075)
chr2 (539-689)||(36987922-36988073)
chr2 (539-689)||(38312410-38312561)
chr2 (539-687)||(17057218-17057367)
chr2 (539-687)||(17085201-17085350)
chr2 (539-689)||(6594851-6595003)
chr2 (539-689)||(4502980-4503130)
chr2 (539-689)||(723594-723742)
chr2 (563-689)||(4484175-4484301)
chr2 (539-689)||(34139620-34139768)
chr2 (563-689)||(32289763-32289889)
chr2 (539-689)||(11067475-11067621)
chr2 (539-686)||(14633678-14633823)
chr2 (539-689)||(14202271-14202419)
chr2 (539-689)||(42362518-42362666)
chr2 (539-689)||(30833517-30833669)
chr2 (539-686)||(2334268-2334415)
chr2 (564-689)||(2838141-2838266)
chr2 (542-689)||(39285012-39285155)
chr2 (539-689)||(29868039-29868189)
chr2 (539-689)||(33162301-33162448)
chr2 (539-689)||(11151443-11151589)
chr2 (570-686)||(24885787-24885903)
chr2 (539-684)||(36317866-36318007)
chr2 (544-689)||(11049729-11049866)
chr2 (539-689)||(36773732-36773879)
chr2 (541-638)||(1345639-1345733)
chr2 (603-689)||(12123439-12123523)
chr2 (570-689)||(11690699-11690808)
chr2 (545-639)||(13121942-13122031)
[»] chr6 (18 HSPs)
chr6 (539-689)||(5408917-5409067)
chr6 (539-689)||(5413242-5413392)
chr6 (539-689)||(31404522-31404672)
chr6 (539-689)||(9182878-9183029)
chr6 (539-689)||(16452175-16452326)
chr6 (539-689)||(5406050-5406197)
chr6 (539-689)||(5410375-5410522)
chr6 (539-689)||(30834381-30834533)
chr6 (539-683)||(16569192-16569334)
chr6 (541-689)||(2171374-2171526)
chr6 (570-689)||(28137258-28137377)
chr6 (539-689)||(33160198-33160349)
chr6 (541-689)||(3072604-3072753)
chr6 (576-689)||(26954138-26954251)
chr6 (539-666)||(33211060-33211183)
chr6 (559-675)||(14521543-14521659)
chr6 (539-687)||(3038776-3038921)
chr6 (609-689)||(6097294-6097374)
[»] chr8 (35 HSPs)
chr8 (539-689)||(34254178-34254328)
chr8 (539-689)||(34256354-34256504)
chr8 (539-689)||(44304026-44304176)
chr8 (539-689)||(17982824-17982974)
chr8 (539-689)||(4731828-4731979)
chr8 (539-689)||(15212956-15213107)
chr8 (539-689)||(30143510-30143661)
chr8 (539-689)||(42498365-42498516)
chr8 (539-689)||(19945206-19945356)
chr8 (541-689)||(1746066-1746214)
chr8 (539-689)||(33352320-33352471)
chr8 (539-689)||(31218428-31218578)
chr8 (539-689)||(27811448-27811599)
chr8 (539-689)||(4733876-4734027)
chr8 (539-689)||(41366465-41366613)
chr8 (539-689)||(43036593-43036743)
chr8 (539-689)||(1345223-1345369)
chr8 (570-687)||(6599170-6599284)
chr8 (570-687)||(6674623-6674737)
chr8 (557-687)||(18105925-18106053)
chr8 (539-689)||(12702478-12702632)
chr8 (539-689)||(40321250-40321396)
chr8 (541-689)||(2627910-2628060)
chr8 (541-688)||(1292317-1292460)
chr8 (539-689)||(4743075-4743212)
chr8 (541-689)||(19491550-19491694)
chr8 (571-689)||(10015277-10015395)
chr8 (539-689)||(3303518-3303668)
chr8 (539-689)||(5689441-5689588)
chr8 (537-632)||(18141986-18142078)
chr8 (603-682)||(8965544-8965621)
chr8 (540-689)||(32902034-32902180)
chr8 (539-629)||(30291778-30291865)
chr8 (595-666)||(4162692-4162759)
chr8 (606-683)||(8154020-8154095)
[»] chr7 (38 HSPs)
chr7 (539-689)||(29991224-29991374)
chr7 (541-689)||(35854088-35854237)
chr7 (539-689)||(23555211-23555362)
chr7 (539-689)||(27347987-27348138)
chr7 (539-690)||(25616024-25616177)
chr7 (539-689)||(48489601-48489752)
chr7 (539-689)||(4178944-4179094)
chr7 (542-689)||(43864417-43864565)
chr7 (539-689)||(47675984-47676134)
chr7 (541-689)||(48408978-48409128)
chr7 (539-689)||(41648861-41649009)
chr7 (539-689)||(4586331-4586482)
chr7 (539-689)||(18126814-18126967)
chr7 (541-689)||(26417488-26417637)
chr7 (539-689)||(31732816-31732967)
chr7 (539-689)||(47673792-47673942)
chr7 (541-689)||(25766804-25766954)
chr7 (558-688)||(48491765-48491896)
chr7 (539-684)||(39731540-39731687)
chr7 (539-689)||(41317286-41317432)
chr7 (539-689)||(495835-495981)
chr7 (539-689)||(14069681-14069831)
chr7 (539-689)||(14379709-14379859)
chr7 (539-689)||(19502349-19502499)
chr7 (539-689)||(1113827-1113973)
chr7 (539-689)||(8153512-8153658)
chr7 (539-689)||(36146259-36146406)
chr7 (539-689)||(38671072-38671220)
chr7 (579-684)||(30024609-30024714)
chr7 (541-646)||(43504044-43504148)
chr7 (576-689)||(31105247-31105357)
chr7 (541-678)||(23564927-23565058)
chr7 (539-686)||(24525356-24525500)
chr7 (541-689)||(23344145-23344286)
chr7 (616-683)||(12097018-12097084)
chr7 (592-632)||(31519115-31519155)
chr7 (539-618)||(12097789-12097865)
chr7 (541-590)||(2759144-2759193)
[»] chr3 (39 HSPs)
chr3 (539-689)||(37408629-37408780)
chr3 (539-689)||(5260170-5260320)
chr3 (539-689)||(19683735-19683886)
chr3 (539-689)||(5257991-5258141)
chr3 (545-689)||(7762442-7762587)
chr3 (541-689)||(9635971-9636120)
chr3 (540-689)||(9634668-9634818)
chr3 (539-683)||(7764635-7764780)
chr3 (539-687)||(45095334-45095482)
chr3 (539-686)||(9581453-9581601)
chr3 (539-690)||(51398984-51399136)
chr3 (539-689)||(40735553-40735703)
chr3 (539-689)||(29811038-29811189)
chr3 (539-681)||(5236312-5236455)
chr3 (539-689)||(761017-761165)
chr3 (539-689)||(40734668-40734818)
chr3 (539-689)||(29813233-29813382)
chr3 (570-689)||(22834854-22834973)
chr3 (563-689)||(23199984-23200109)
chr3 (541-686)||(21350861-21350999)
chr3 (539-689)||(29682529-29682677)
chr3 (539-691)||(44700329-44700477)
chr3 (539-689)||(23391760-23391907)
chr3 (539-689)||(29196237-29196384)
chr3 (539-690)||(31314615-31314762)
chr3 (539-689)||(9666317-9666464)
chr3 (539-689)||(23197791-23197936)
chr3 (570-689)||(39153212-39153331)
chr3 (607-689)||(801328-801411)
chr3 (541-689)||(7779848-7779998)
chr3 (545-689)||(51351987-51352125)
chr3 (539-689)||(16499199-16499335)
chr3 (544-689)||(27305564-27305703)
chr3 (541-689)||(32891276-32891411)
chr3 (557-689)||(2074929-2075057)
chr3 (539-632)||(32744351-32744434)
chr3 (607-646)||(6716742-6716781)
chr3 (660-689)||(37406981-37407010)
chr3 (544-621)||(53921422-53921496)
[»] chr5 (31 HSPs)
chr5 (539-689)||(25412931-25413081)
chr5 (539-689)||(30682770-30682921)
chr5 (539-689)||(13343231-13343381)
chr5 (539-689)||(30182759-30182909)
chr5 (539-689)||(36073890-36074040)
chr5 (539-689)||(39468396-39468547)
chr5 (540-689)||(13239923-13240072)
chr5 (539-689)||(16409648-16409800)
chr5 (539-689)||(42426083-42426233)
chr5 (539-689)||(26178055-26178207)
chr5 (539-689)||(42428278-42428428)
chr5 (539-689)||(33831850-33831999)
chr5 (539-689)||(5887282-5887432)
chr5 (539-689)||(28750503-28750653)
chr5 (541-689)||(8565795-8565943)
chr5 (539-689)||(26170935-26171087)
chr5 (539-685)||(19806533-19806679)
chr5 (539-677)||(37439312-37439450)
chr5 (539-689)||(538195-538341)
chr5 (539-689)||(31183141-31183294)
chr5 (570-689)||(16649682-16649801)
chr5 (575-689)||(42927099-42927213)
chr5 (539-689)||(13488373-13488521)
chr5 (539-689)||(32636994-32637144)
chr5 (607-689)||(18441489-18441570)
chr5 (607-689)||(9789069-9789150)
chr5 (576-689)||(16452286-16452396)
chr5 (564-689)||(533960-534079)
chr5 (657-689)||(3075597-3075629)
chr5 (607-651)||(29720605-29720648)
chr5 (607-651)||(29722765-29722808)
[»] chr4 (35 HSPs)
chr4 (539-689)||(34570261-34570412)
chr4 (539-689)||(56178483-56178634)
chr4 (539-689)||(52082510-52082661)
chr4 (539-689)||(48143214-48143369)
chr4 (540-689)||(52095209-52095359)
chr4 (539-689)||(5369929-5370080)
chr4 (539-689)||(13992138-13992290)
chr4 (539-689)||(47038263-47038409)
chr4 (539-689)||(9927306-9927456)
chr4 (540-690)||(54199754-54199904)
chr4 (544-689)||(37740800-37740946)
chr4 (539-678)||(5429849-5429989)
chr4 (539-689)||(5871990-5872138)
chr4 (539-689)||(26175484-26175634)
chr4 (539-689)||(12739401-12739548)
chr4 (539-689)||(12743776-12743923)
chr4 (539-689)||(46147243-46147389)
chr4 (539-689)||(48893490-48893636)
chr4 (539-689)||(29254664-29254813)
chr4 (541-627)||(29999719-29999805)
chr4 (539-686)||(52467208-52467352)
chr4 (541-686)||(31474323-31474464)
chr4 (569-689)||(31495151-31495272)
chr4 (541-689)||(6542034-6542175)
chr4 (539-690)||(45687033-45687180)
chr4 (542-689)||(4588132-4588272)
chr4 (557-689)||(36463243-36463373)
chr4 (540-674)||(36994694-36994824)
chr4 (650-689)||(29999676-29999715)
chr4 (541-689)||(37229575-37229717)
chr4 (539-585)||(12745266-12745312)
chr4 (541-624)||(29056531-29056610)
chr4 (540-689)||(48142233-48142373)
chr4 (574-671)||(3913782-3913876)
chr4 (658-687)||(24969953-24969982)
[»] chr1 (38 HSPs)
chr1 (539-689)||(3157035-3157186)
chr1 (539-689)||(49918520-49918671)
chr1 (539-689)||(37559712-37559865)
chr1 (539-689)||(13316199-13316349)
chr1 (539-689)||(8550631-8550784)
chr1 (539-689)||(834017-834165)
chr1 (539-689)||(44455330-44455481)
chr1 (539-689)||(20762843-20762989)
chr1 (539-689)||(31659408-31659559)
chr1 (539-689)||(10925396-10925543)
chr1 (539-689)||(51765568-51765720)
chr1 (539-666)||(37503427-37503555)
chr1 (539-689)||(28220074-28220224)
chr1 (539-689)||(28223269-28223419)
chr1 (539-689)||(3846968-3847119)
chr1 (539-689)||(196757-196905)
chr1 (539-689)||(3189501-3189665)
chr1 (539-689)||(3198318-3198482)
chr1 (539-689)||(3207157-3207321)
chr1 (539-686)||(50169065-50169208)
chr1 (539-689)||(40122048-40122194)
chr1 (539-689)||(50167027-50167173)
chr1 (539-689)||(30476294-30476444)
chr1 (539-689)||(13137828-13137974)
chr1 (539-689)||(1833683-1833829)
chr1 (539-689)||(28265406-28265552)
chr1 (541-689)||(41361087-41361231)
chr1 (541-689)||(23555118-23555262)
chr1 (539-689)||(45644205-45644352)
chr1 (570-683)||(4552502-4552615)
chr1 (570-689)||(8870575-8870694)
chr1 (541-689)||(15820479-15820617)
chr1 (539-689)||(13659198-13659334)
chr1 (544-689)||(927830-927969)
chr1 (607-689)||(9987443-9987525)
chr1 (570-683)||(5460104-5460215)
chr1 (656-689)||(36683897-36683930)
chr1 (539-590)||(46065088-46065135)
[»] scaffold0016 (1 HSPs)
scaffold0016 (539-689)||(114773-114924)
[»] scaffold0066 (1 HSPs)
scaffold0066 (540-689)||(20262-20412)
[»] scaffold0002 (1 HSPs)
scaffold0002 (540-689)||(434705-434855)
[»] scaffold1519 (1 HSPs)
scaffold1519 (539-689)||(1086-1237)
[»] scaffold0491 (2 HSPs)
scaffold0491 (539-689)||(8580-8732)
scaffold0491 (539-689)||(11006-11158)
[»] scaffold1668 (1 HSPs)
scaffold1668 (539-689)||(1349-1496)
[»] scaffold0286 (1 HSPs)
scaffold0286 (541-689)||(11731-11887)
[»] scaffold0006 (1 HSPs)
scaffold0006 (539-689)||(148959-149095)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 540
Target Start/End: Complemental strand, 41299736 - 41299197
Alignment:
Q  17 agggaagcaatctaatctaatataagattaccctcacgatgaatgtgagaacnnnnnnngtatatttgtggtgatgtctatgcaaattaaccatttgttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||    
T  41299736 agggaagcaatctaatctaatataagattaccctcacgatgaatgtgagaactttttttgtatatttgtggtgatg-ctatgcaaattaaccatttgttt 41299638  T
Q  117 ttaaattctaaggtgatatggaacaatatcaaaaaa-ttgaaagctaaagttgtcaattgagagtcggtatccaaccagagagtgatcaacnnnnnnnga 215  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||       ||    
T  41299637 ttaaattctaaggtgataaggaacaatatcaaaaaaattgaaagctaatgttgtcaattgagagtcagtatccaaccagagagtgatcaactttttttga 41299538  T
Q  216 aagcagtttcaatggcc-gtcatagatccaattaactcaacattaaaggaagtattattaccaatgttgacaggaaaaga----------tttgcatggt 304  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          ||||||||||    
T  41299537 aagcagtttcaatggcccgtcatagatccaattaactcaacattaaaggaagtattattaccaatgttgacaggaaaacaaccataaacatttgcatggt 41299438  T
Q  305 gatccctaatgataccctcgcaagcagaaggacaagaaaaacctctagctgcc-----aatattgcattttgtccaagaaattataggagaatgccaatg 399  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  41299437 gatccctaatgataccctcgcaagcagaaggaccagaaaaacctctagctgccttgtcaatattgcattttgtccaagaaattataggagaatgccaatg 41299338  T
Q  400 aacttgtttgatgttgagagcctttggagaatgaatgttaaccaaaaaagacatccaaaatctgaaattcttgcatagaatgagagaaggtagccttgaa 499  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41299337 aacctgtttgatgttgagagcctttggagaatgaatgttaaccgaaaaagacatccaaaatctgaaattcttgcatagaatgagagaaggtagccttgaa 41299238  T
Q  500 gatattacttgtcaaataaacactagaaacaaaggctcact 540  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41299237 gatattacttgtcaaataaacactagaaacaaaggctcact 41299197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5723253 - 5723103
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  5723253 ctttggtgtgtttgtttctctattctctccttttatcttttgcttgtggtttgtgcttttctttttgattcctagattagatctaggtgttgttattgtt 5723154  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5723153 gattattgtttgtgctcactttgatattggttactactttactttgctcca 5723103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 36205662 - 36205512
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||    
T  36205662 ctttggtgtgtttgtttctctcttctctccttttatattttgcttgtggtttctgcttttcactttgattcctagattagatctaggtgctgttattgtt 36205563  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  36205562 gattattgcttgtgttcactttgttattggttactactttcctttgctcca 36205512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 45099925 - 45100075
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||| |||||    
T  45099925 ctttggtgtgtttgtttctctcttctctccttttatattttgcttgtgatttgtgcttttcactttgattcctagattagatctaggtgctgttattgtt 45100024  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  45100025 gattattgcttgtgttcactttgatattggttactactttcctttgctcca 45100075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 36988073 - 36987922
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  36988073 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggctttgtgcttttcactttgattcctagattagatctaggtgttgttattgt 36987974  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| | ||||||| ||||||||||||||||||||||||||    
T  36987973 tgattattgcttgtgtttactttgaaattggttactactttcctttgctcca 36987922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 38312410 - 38312561
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||| ||||||||||||  |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  38312410 ctttgatgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgt 38312509  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  38312510 tgattgttgcttgtgttcactttgatattggttactactttcctttgctcca 38312561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 539 - 687
Target Start/End: Complemental strand, 17057367 - 17057218
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||| ||||||  |||||||||||||||||||||  |||||||| |||| |||||||||||||||||||||| |||| ||||    
T  17057367 ctttggtgtgtttgttcctctcgtctctccctttatcttttgcttgtggttttgtgcttttcactttaattcctagattagatctaggtgctgttattgt 17057268  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctc 687  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  17057267 tgattattgcttgtgttcactttgatattggttactactttcctttgctc 17057218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 539 - 687
Target Start/End: Complemental strand, 17085350 - 17085201
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||| ||||||  |||||||||||||||||||||  |||||||| |||| |||||||||||||||||||||| |||| ||||    
T  17085350 ctttggtgtgtttgttcctctcgtctctccctttatcttttgcttgtggttttgtgcttttcactttaattcctagattagatctaggtgctgttattgt 17085251  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctc 687  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  17085250 tgattattgcttgtgttcactttgatattggttactactttcctttgctc 17085201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 6595003 - 6594851
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctca-ttttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||| |||||||| |||||||||||||||||| |||| |||    
T  6595003 ctttggtgtgtttgtttctctcttctctcccttttatcttttgcttgtggttttgtgcttttcactttgatttctagattagatctaggtgctgttattg 6594904  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||  ||||| ||||||||||||||||||||||||| ||||||||||    
T  6594903 ttgattattacttgtgttcactttgatattggttactactttactttgctcca 6594851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 4503130 - 4502980
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  4503130 ctttggtgtgtttgtttctctcttctctccttttatcttgtgcttgtgttttgtgcttttcactttgtttcctagattagatctaggtgctgttattgtt 4503031  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||   |||||||| ||||||||||||||||||||| |||||    
T  4503030 gattattgcttgcattcactttgttattggttactactttcctttactcca 4502980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 723742 - 723594
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  723742 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 723645  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  723644 tg-ttgttgattgtgttcactttgatattggttactactttcctttgctcca 723594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 563 - 689
Target Start/End: Complemental strand, 4484301 - 4484175
Alignment:
Q  563 ctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttga 662  Q
    ||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||  |||||||||     
T  4484301 ctctccttttatcttgtgcttgtggtttttgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcactcactttgt 4484202  T
Q  663 tattggttactactttcctttgctcca 689  Q
    |||||||||||||||||||||||||||    
T  4484201 tattggttactactttcctttgctcca 4484175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 34139768 - 34139620
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||| ||||| || |    
T  34139768 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtcttgttattat 34139671  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  34139670 tg-ttgttgcttgtgttcactttgatattggttactactttcctttgctcca 34139620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 563 - 689
Target Start/End: Original strand, 32289763 - 32289889
Alignment:
Q  563 ctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttga 662  Q
    ||||| ||||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||  | |||||||     
T  32289763 ctctccttttatcttgtgcttgtgttttatgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcacccactttgt 32289862  T
Q  663 tattggttactactttcctttgctcca 689  Q
    || ||||||||||||||||||||||||    
T  32289863 tagtggttactactttcctttgctcca 32289889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 11067475 - 11067621
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  11067475 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 11067570  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  11067571 tg-ttgttgcttgtgttcactttgatattggttactactttcctttgctcca 11067621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 539 - 686
Target Start/End: Complemental strand, 14633823 - 14633678
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||| |||||||  ||||||||||| |||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  14633823 ctttggtgtgtttgtttctctattctctc--tttatcttttgattgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 14633726  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgct 686  Q
    || || ||| ||||| |||||||||||||||||||||||||||||||||    
T  14633725 tg-ttgttgcttgtgttcactttgatattggttactactttcctttgct 14633678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 14202419 - 14202271
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttt-atgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||| || |    
T  14202419 ctttggtgtgtttgtttatctcttctctc--tttatcttttgcttgtggttttaagcttttcactttgattactagattagatctaggtgttgttattat 14202322  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||| | |||||||||||||| ||||||||||||||| |||||    
T  14202321 tg-ttgttgcttgcgttcactttgatattgattactactttcctttactcca 14202271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 42362518 - 42362666
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||   | ||||| |||||||| ||||||||||||||||||||||| || |    
T  42362518 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattat 42362615  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||| | |||||||||| |||||||||||||||||||||||||    
T  42362616 tg-ttgttgcttgagttcactttgattttggttactactttcctttgctcca 42362666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 30833517 - 30833669
Alignment:
Q  539 ctttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  ||||||  |||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||    
T  30833517 ctttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtggtttgtgcttttcactttgtttcctagattagatctaggtgttgttattg 30833616  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||  ||||| |   || ||||||||||||||||||||||||    
T  30833617 ttgattattgcttgcactcacataattaatggttactactttcctttgctcca 30833669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 539 - 686
Target Start/End: Complemental strand, 2334415 - 2334268
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgc--ttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||| ||   ||||| |||||||| | ||||||||||||||||||||| ||     
T  2334415 ctttggtgtgtttgtttctctcttctctccctttatcttgtgcttgtggttt-tgaagttttcactttgattaccagattagatctaggtgttgttatta 2334317  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgct 686  Q
    ||| || ||| ||||| | ||||||| |||||||||||||||||||||||    
T  2334316 ttg-ttgttgcttgtgtttactttgaaattggttactactttcctttgct 2334268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 564 - 689
Target Start/End: Original strand, 2838141 - 2838266
Alignment:
Q  564 tctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttga 662  Q
    ||||| |||||||||||||||||||||   ||||||| ||||||||||||||||| |||||||||||||| |||||| || ||||||||| | |||||||    
T  2838141 tctcactttatcttttgcttgtggttttgagcttttcactttgattcctagattatatctaggtgttgttattgttg-ttgttgtttgtgtttactttga 2838239  T
Q  663 tattggttactactttcctttgctcca 689  Q
    || |||||||||||||||||| |||||    
T  2838240 tagtggttactactttcctttactcca 2838266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 542 - 689
Target Start/End: Original strand, 39285012 - 39285155
Alignment:
Q  542 tggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttga 640  Q
    ||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |||     
T  39285012 tggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattg- 39285106  T
Q  641 ttattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || ||| ||||| | ||||||| ||||||||||||||| ||||||||||    
T  39285107 ttgttgcttgtgtttactttgaaattggttactacttttctttgctcca 39285155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 29868039 - 29868189
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||||||||||||||||  |||||||| ||||||||| |||  | ||||| |||||||| ||||||||||||||||||||||| || |    
T  29868039 ctttgatgtgtttgtttctctcttctctccgtttatcttgtgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattat 29868138  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| | ||||| | |||| |||||||||| ||||||||||    
T  29868139 tg-ttgttgcttgtgtttactttaaaattgattactacttttctttgctcca 29868189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 33162448 - 33162301
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||    ||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  33162448 ctttggtgtgtttgtttctct----tctctatttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 33162353  T
Q  638 tgattattgtttg-tgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||| || |  |||||||||||||||||||||||||||||||||    
T  33162352 tg-ttgttgcttgttgtttgctttgatattggttactactttcctttgctcca 33162301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 11151589 - 11151443
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  ||||||||||| |||||||||   ||||||| |||||||| ||||||||||||||| ||||||| || |    
T  11151589 ctttggtgtgtttgtttctct--tctctc--tttatcttttgtttgtggttttgagcttttcactttgattactagattagatctagctgttgttattat 11151494  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| |||||||||||||| ||||||||||  |||||||||    
T  11151493 tg-ttgttgcttgtgttcactttgatattgattactacttttatttgctcca 11151443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 570 - 686
Target Start/End: Original strand, 24885787 - 24885903
Alignment:
Q  570 tttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||||| |  ||| || ||  ||||| |||||||||||||||    
T  24885787 tttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttatcattg-ttgtttcttgtgttcactttgatattgg 24885885  T
Q  669 ttactactttcctttgct 686  Q
    |||||| |||||||||||    
T  24885886 ttactattttcctttgct 24885903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 539 - 684
Target Start/End: Complemental strand, 36318007 - 36317866
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||| |||  ||| ||  |||||||||||||||||||||  |||||||| |||||||| |||||||| |||||||||||||| || |    
T  36318007 ctttggtgtgtttgtttatct--tctttc--tttatcttttgcttgtggttttgtgcttttcactttgattactagattaaatctaggtgttgttattat 36317912  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttg 684  Q
    ||  | ||| ||||| | ||||||| |||||||||||||||| ||||    
T  36317911 tg-ctgttgcttgtgtttactttgaaattggttactactttcatttg 36317866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 544 - 689
Target Start/End: Original strand, 11049729 - 11049866
Alignment:
Q  544 gtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgatt 642  Q
    ||||||||||||||||  ||||||  ||||| |||||||||||||||  | |||||| |||||||||||||||||||||||||| || || ||||||       
T  11049729 gtgtgtttgtttctct--tctctc--tttatattttgcttgtggttttgtacttttcactttgattcctagattagatctaggt-ttattattgttg--- 11049820  T
Q  643 attgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     ||| || || | |||||||||||||||||||||||| |||||||||    
T  11049821 -ttgcttatgattactttgatattggttactactttcttttgctcca 11049866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 36773732 - 36773879
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||| ||  |||||||||||||||||||||   |||||||| ||| ||| ||||||||||||||||||||||| || |    
T  36773732 ctttggtgtgtttgtttctct--tctttc--tttatcttttgcttgtggttttgagcttttcttttttattactagattagatctaggtgttgttattat 36773827  T
Q  638 tgattattg-tttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||  || |  ||||||||||||||||||||||| |||||||||    
T  36773828 tg-ttgttgcttcttgttggctttgatattggttactactttcatttgctcca 36773879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 541 - 638
Target Start/End: Original strand, 1345639 - 1345733
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||||||||||||||||||    ||||| |||||||| || |||||||||   ||||||| |||||||||||||||||||||||||||||||| |||||    
T  1345639 ttggtgtgtttgtttctct----tctcactttatcttatgattgtggttttgagcttttcactttgattcctagattagatctaggtgttgttattgtt 1345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 603 - 689
Target Start/End: Complemental strand, 12123523 - 12123439
Alignment:
Q  603 ttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||| ||||||||||| ||||| ||||| |||||| || ||||||| | | ||||||||||||||||||||||||||||||||||    
T  12123523 ttgatttctagattagatataggt-ttgttattgttg-ttgttgtttgaggttactttgatattggttactactttcctttgctcca 12123439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 570 - 689
Target Start/End: Original strand, 11690699 - 11690808
Alignment:
Q  570 tttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||||||   ||||||| |||| |||||||||||||||||||||||||          |||||| ||||| |||| |||||||| |    
T  11690699 tttatcttttgcttgtggttttgagcttttcactttaattcctagattagatctaggtgttg----------ttattgcttgtgttcac-ttgatattag 11690787  T
Q  669 ttactactttcctttgctcca 689  Q
    |||||||||||||||||||||    
T  11690788 ttactactttcctttgctcca 11690808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 639
Target Start/End: Original strand, 13121942 - 13122031
Alignment:
Q  545 tgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||||||||||||  ||||||  |||||||||||||||||| |||||| ||||| | |||||| |||||||| |||||||| ||||| ||||||    
T  13121942 tgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttatgtttttcac-ttgatttctagattacatctaggt-ttgttattgttg 13122031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 6e-70; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5409067 - 5408917
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  5409067 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggtttgtgcttttctctttgattcctagattagatctaggtgttgttattgtt 5408968  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5408967 gattattgcttgtgctcactttgatattggttactactttcctttgctcca 5408917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5413392 - 5413242
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  5413392 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggtttgtgcttttctctttgattcctagattagatctaggtgttgttattgtt 5413293  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5413292 gattattgcttgtgctcactttgatattggttactactttcctttgctcca 5413242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 31404672 - 31404522
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| |||||    
T  31404672 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggtttgtgctttcctctttgattcctagattagatctaggtgctgttattgtt 31404573  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||||||||||||||||||| |||||| ||||||||||||||    
T  31404572 gattattgcttgtgctcactttgatattgattactattttcctttgctcca 31404522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 9183029 - 9182878
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||||||||  | |||||| |||||||||||||||||||||||||||||||| ||||    
T  9183029 ctttggtgtgtttgtccctctcttctctccctttatcttttgcttgtggttttgtacttttcactttgattcctagattagatctaggtgttgttattgt 9182930  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  9182929 tgattattgcttgtgttcactttgatattggttactactttcctttgctcca 9182878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 16452326 - 16452175
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatctttt-gcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  16452326 ctttggtgtgtttgtttctctcttctctccttttatatttttgcttgtggtttgtgcttttcactttgattcctagattagatctaggtgatgttattgt 16452227  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||  |||||||| ||||||||||||||||||||| |||||    
T  16452226 tgattattgcttgtattcactttgttattggttactactttcctttactcca 16452175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5406197 - 5406050
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||   || | || ||    
T  5406197 ctttggtgtgtttgtttctctcttctctccttttatcttttgtttgtggtttgtgcttttctctttgattcctagattagatctagg---tgctattatt 5406101  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||| |||||    
T  5406100 gattattgcttgtgctcactttaatattggttactacttttctttactcca 5406050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5410522 - 5410375
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||   || | || ||    
T  5410522 ctttggtgtgtttgtttctctcttctctccttttatcttttgtttgtggtttgtgcttttctctttgattcctagattagatctagg---tgctattatt 5410426  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||| |||||    
T  5410425 gattattgcttgtgctcactttaatattggttactacttttctttactcca 5410375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 30834533 - 30834381
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctc--tttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||||||| || |||| ||  |||||||| ||||||||||||||||| |||| |||    
T  30834533 ctttggtgtgtttgtttatctcttctctccttttatattttgcttgtggtttgtgtttttttcactttgattcatagattagatctaggtgctgttattg 30834434  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||   |||||||| |||||||||||| ||||||||||||||    
T  30834433 ttgattattgcttgcattcactttgttattggttactattttcctttgctcca 30834381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 539 - 683
Target Start/End: Original strand, 16569192 - 16569334
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||| |||  ||||||| |||||||| |||||||||||||||||| || | ||||    
T  16569192 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttgtggttttgagcttttcactttgatttctagattagatctaggtgctgctattgt 16569289  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttccttt 683  Q
    || |||||| ||| | |||||||||| |||||||||||||||||||    
T  16569290 tg-ttattgcttgagttcactttgattttggttactactttccttt 16569334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 2171526 - 2171374
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctca-ttttatcttttgcttgtggtttatgcttttct---ctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||| ||||||| |||||||||||  ||||||||| |||||||| |||||| |||| |   ||||||||||||||||||||||||||| |||| |||    
T  2171526 ttggtgtatttgtttatctcttctctcccttttatcttgtgcttgtgttttatgttttttttcactttgattcctagattagatctaggtgctgttattg 2171427  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||  | ||||||| || ||||||||||||||||||||||||    
T  2171426 ttgattattgcttgcacacactttgttagtggttactactttcctttgctcca 2171374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 570 - 689
Target Start/End: Complemental strand, 28137377 - 28137258
Alignment:
Q  570 tttatcttttgcttgtggtt-tatgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||||| | |||||||| |||||||||||| |||||||||| |||||||| |||| | |||||| ||||| | |||||||||||||    
T  28137377 tttatcttttgcttgtggttatgtgcttttcactttgattcctatattagatctatgtgttgttattgtcg-ttattgcttgtgtttactttgatattgg 28137279  T
Q  669 ttactactttcctttgctcca 689  Q
    |||||||||||||||||||||    
T  28137278 ttactactttcctttgctcca 28137258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 33160349 - 33160198
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcatttt-atcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||||||||||||||||||||||| |||| |||||||| |||||||||  |||||||| |||||||| |||||||||||||||||||||||  |     
T  33160349 ctttggtgtgtttgtttctctcttctctcctttttatcttttgtttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttaata 33160250  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||| || ||| ||||  | ||||||| ||||||||||| ||||||||||||||    
T  33160249 ttg-ttgttgcttgtatttactttgaaattggttactattttcctttgctcca 33160198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 3072753 - 3072604
Alignment:
Q  541 ttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||| |||||||  ||||||  |||| ||||||||| |||||||| |||||||||||| ||| | ||||||||||||||||| ||| | ||||||||    
T  3072753 ttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtgttttatgcttttcactt-gtttcctagattagatctatgtgctatttttgtt 3072655  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||  | ||||||| || ||||||||||||||||||||||||    
T  3072654 gattattgcttgcacacactttgttagtggttactactttcctttgctcca 3072604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 576 - 689
Target Start/End: Complemental strand, 26954251 - 26954138
Alignment:
Q  576 ttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttacta 674  Q
    |||| ||||||||||  |||||||| ||||||||||||||||||||||||||| |||| |||||| |||||  || || | ||||||| |||||||||||    
T  26954251 tttttcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttg-ttatttcttatgtttactttgaaattggttacta 26954153  T
Q  675 ctttcctttgctcca 689  Q
    ||||| |||||||||    
T  26954152 ctttcttttgctcca 26954138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 539 - 666
Target Start/End: Complemental strand, 33211183 - 33211060
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||| |||||||||||||  ||||||  |||||||||||||||||||||  || ||||| ||||||||||||||||||||||||||||| || ||||    
T  33211183 ctttggtatgtttgtttctct--tctctc--tttatcttttgcttgtggttttgtgattttcactttgattcctagattagatctaggtgttattattgt 33211088  T
Q  638 tgattattgtttgtgctcactttgatatt 666  Q
    || |||||| ||||| | ||||| |||||    
T  33211087 tg-ttattgcttgtgtttactttaatatt 33211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 675
Target Start/End: Complemental strand, 14521659 - 14521543
Alignment:
Q  559 tcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcac 657  Q
    |||| ||||| |||||||| ||||||||||||   ||||||| |||||||||||||||||||||||||||||||| || ||| || ||| ||||| | ||    
T  14521659 tcttttctcactttatcttatgcttgtggttttgagcttttcactttgattcctagattagatctaggtgttgttgttattg-ttgttgcttgtgtttac 14521561  T
Q  658 tttgatattggttactac 675  Q
    ||||| ||||||||||||    
T  14521560 tttgaaattggttactac 14521543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 687
Target Start/End: Complemental strand, 3038921 - 3038776
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatg--cttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||||||||||||| |  ||||||  ||||||||||||||||||||| ||  |||||| |||||||| ||| ||||||||||||||||||| ||     
T  3038921 ctttggtgtgtttgtttcttt--tctctc--tttatcttttgcttgtggttt-tgaacttttcactttgattactatattagatctaggtgttgttatta 3038827  T
Q  637 ttgattattgtttg-tgctcactttgatattggttactactttcctttgctc 687  Q
    ||| || ||  ||| || |  ||||||||||||||| |||||||||||||||    
T  3038826 ttg-ttgttacttgttgtttgctttgatattggttattactttcctttgctc 3038776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 609 - 689
Target Start/End: Complemental strand, 6097374 - 6097294
Alignment:
Q  609 cctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||| ||||| |||||||||||||||| | |||  | ||||||| || ||||||||||||||| ||||||||    
T  6097374 cctagattagatcaaggtgctgtttttgttgattatagcttgcacacactttgttagtggttactactttccgttgctcca 6097294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 34254328 - 34254178
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  34254328 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggtttgtgcttttctctttgattcctagattagatctaggtgctgttattgtt 34254229  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34254228 gattattgcttgtgctcactttgatattggttactactttcctttgctcca 34254178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 34256504 - 34256354
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  34256504 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggtttgtgcttttctctttgattcctagattagatctaggtgctgttattgtt 34256405  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34256404 gattattgcttgtgctcactttaatattggttactactttcctttgctcca 34256354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 44304026 - 44304176
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||    
T  44304026 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggtttgtgcttttcactttgatttctagattagatctaggtgttgttattgtt 44304125  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  44304126 gattattgcttgtgctcactttaatattggttactactttcctttgctcca 44304176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 17982824 - 17982974
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||    
T  17982824 ctttggtgtgtttgtttctctcttctctccttttatattttgcttgtggtttgtgcttttcactttgattcctagattagatctaggtgctgttattgtt 17982923  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||| |||||||| ||||||||||||| |||||||||||||    
T  17982924 gattattgcttgtgttcactttgttattggttactacgttcctttgctcca 17982974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 4731828 - 4731979
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  4731828 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgt 4731927  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  4731928 tgattattgtttgtgttcactttgatatcggttactactttcctttgctcca 4731979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 15212956 - 15213107
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||| |||| ||||    
T  15212956 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggctttgtgcttttcactttgattcctagattagatcaaggtgctgttattgt 15213055  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15213056 tgattattgtttgtgttcactttgatattggttactactttcctttgctcca 15213107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 30143510 - 30143661
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||| ||||    
T  30143510 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattcctagattagatctaggtgttgttattgt 30143609  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  30143610 tgattattgcttgtgttcactttgatattggttactactttcctttgctcca 30143661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 42498365 - 42498516
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||||||| ||||    
T  42498365 ctttggtgtgtttgtttccctcttctctccttttatcttttgcttgtggttttgtgtttttcactttgattcctagattagatctaggtgttgttattgt 42498464  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | ||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  42498465 taattattgcttgtgttcactttgatattggttgctactttcctttgctcca 42498516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 19945356 - 19945206
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||| |||||    
T  19945356 ctttggtgtgtttgtttctctcttctctccttttatattttgcttgtggtttgtgcttttcacttcgattcctagattagatctaggtgctgttattgtt 19945257  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||   |||||||| |||||||||||||||||||||||||||    
T  19945256 gattattgcttgcattcactttgttattggttactactttcctttgctcca 19945206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 1746214 - 1746066
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgttga 640  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||  ||||||  ||||||||||||||||||||||||||| |||| |||||||    
T  1746214 ttggtgtgtttgtttctctcttctctccttttatattttgcttgtggtttgcgcttttgactttgattcctagattagatctaggtgctgttattgttga 1746115  T
Q  641 ttattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||| ||||| |||||||| ||||||||||||||||||||| |||||    
T  1746114 ttattgcttgtgttcactttgttattggttactactttcctttactcca 1746066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 33352320 - 33352471
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||| ||||||| |||| ||||||||||||||||||| ||| || ||||| |||||||| ||||||||||| ||||||||||| ||||    
T  33352320 ctttgatgtgtttgttcctctcttatctccttttatcttttgcttgtggatttgtgtttttcactttgatttctagattagatttaggtgttgttattgt 33352419  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  33352420 tgattattgcttgtgttcactttgatattggttattactttcctttgctcca 33352471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 31218428 - 31218578
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| || ||| |||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  31218428 ctttggtgtgtttgtttctctcttctctccttttatcttgtgcttatgttttgtgcttttcactttgtttcctagattagatctaggtgctgttattgtt 31218527  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||   |||||||| |||||||| ||||||||||||||||||    
T  31218528 gattattgcttgcattcactttgttattggttgctactttcctttgctcca 31218578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 27811448 - 27811599
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||| || | |||||||||   ||||||||||||||||| |||  |||||||| |||||||||||| ||||||||||||||||||| ||||    
T  27811448 ctttggtgtgttttttcccctcttctcttgctttatcttttgcttgtgattttgtgcttttcactttgattcctaaattagatctaggtgttgttattgt 27811547  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| |||||    
T  27811548 tgattattgcttgtgttcactttgatattggttactactttcctttcctcca 27811599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 4733876 - 4734027
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||||   |||||||||| ||||||||||  ||||||||  |||| |||||| ||| ||||||||||||||| ||||    
T  4733876 ctttggtgtgtttgttcctctcttctctacctttatcttttccttgtggttttgtgcttttcattttgtttcctacatttgatctaggtgttgttattgt 4733975  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  4733976 tgattattgcttgtgttcattttgatattggttactactttcctttgctcca 4734027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 41366613 - 41366465
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||  || ||||||||| ||||| |||||||| |||||||||  |||||||| |||||||||||| ||||||||||||||||||| ||||    
T  41366613 ctttggtgtgttttgtt-tctcttctcccattt-atcttttgtttgtggttttgtgcttttcactttgattcctatattagatctaggtgttgttattgt 41366516  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  41366515 tg-ttattgcttgtgtttactttgatattggttactactttcctttgctcca 41366465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 43036593 - 43036743
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| |||  ||||||| ||||| || |||||||||||||||||| |||| || |    
T  43036593 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttggttactagattagatctaggtggtgttgttat 43036692  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| | ||||||| ||||||||||||||||||||||||||    
T  43036693 tg-ttgttgcttgtgtttactttgaaattggttactactttcctttgctcca 43036743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 1345369 - 1345223
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||| |||   | ||||| |||||||| |||||||||||||||||||| || || |    
T  1345369 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtgattttgagattttcactttgattactagattagatctaggtgttattattat 1345274  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||||||||| | ||||||||||||||||||||||||||||||||||    
T  1345273 tg-ttgttgtttgtgtttactttgatattggttactactttcctttgctcca 1345223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 570 - 687
Target Start/End: Original strand, 6599170 - 6599284
Alignment:
Q  570 tttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||| ||||||||||  |||||||| |||||||| ||||||||||||||||||||||| || |||    ||||||||| |||||||||||||||    
T  6599170 tttatctttttcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattg----ttgtttgtgttcactttgatattgg 6599265  T
Q  669 ttactactttcctttgctc 687  Q
    |||||||||||||||||||    
T  6599266 ttactactttcctttgctc 6599284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 570 - 687
Target Start/End: Original strand, 6674623 - 6674737
Alignment:
Q  570 tttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||| ||||||||||  |||||||| |||||||| ||||||||||||||||||||||| || |||    ||||||||| |||||||||||||||    
T  6674623 tttatctttttcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattg----ttgtttgtgttcactttgatattgg 6674718  T
Q  669 ttactactttcctttgctc 687  Q
    |||||||||||||||||||    
T  6674719 ttactactttcctttgctc 6674737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 557 - 687
Target Start/End: Complemental strand, 18106053 - 18105925
Alignment:
Q  557 tctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctc 655  Q
    |||||||||||  ||||||||||||||||| |||  || ||||| ||||||||||||||||||||||||||| |||| |||||| |||||| ||||| |     
T  18106053 tctcttctctc--tttatcttttgcttgtgattttgtgtttttcactttgattcctagattagatctaggtgatgttattgttg-ttattgcttgtgttt 18105957  T
Q  656 actttgatattggttactactttcctttgctc 687  Q
    ||||| ||||||||||||||||||||||||||    
T  18105956 actttaatattggttactactttcctttgctc 18105925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 12702632 - 12702478
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattc-ctagattagatctaggtgttgtttttg 636  Q
    ||||||| |||||||||||||||||||||  |||||||| ||||||||||||  || ||||| ||||||||  ||||||||||||||||||| ||| ||     
T  12702632 ctttggtatgtttgtttctctcttctctccctttatcttgtgcttgtggttttgtgtttttcactttgattttctagattagatctaggtgtcgttgtta 12702533  T
Q  637 ttgattattgtt---tgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || ||| |||||   |||| | ||||||||||||||||||||||||||||||||||    
T  12702532 tt-attgttgttgcttgtgtttactttgatattggttactactttcctttgctcca 12702478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 40321250 - 40321396
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  40321250 ctttgatgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 40321345  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| | |||||||||||| || ||||||||||||||||||    
T  40321346 tg-ttgttgcttgtgtttactttgatattgattgctactttcctttgctcca 40321396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 2627910 - 2628060
Alignment:
Q  541 ttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||| |||||||  ||||||  |||| ||||||||| |||||||| |||||||||||| ||| | |||||||||||||||||||||||||| |||||    
T  2627910 ttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtgttttatgcttttcactt-gtttcctagattagatctaggtgttgttattgtt 2628008  T
Q  639 ga-ttattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| |||  | ||||||| || ||||||||||||||||||||||||    
T  2628009 gattttttgcttgcacccactttgttagtggttactactttcctttgctcca 2628060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 541 - 688
Target Start/End: Complemental strand, 1292460 - 1292317
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||||||||||||||||  |||||| ||  |||||||||| |||||||   ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  1292460 ttggtgtgtttgtttctct--tctctcctt--atcttttgctcgtggttttgagcttttcactttgattcctagattagatctaggtgttgttattgttg 1292365  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcc 688  Q
     ||| |  ||||| | |||||||||||| |||||||||| |||||||||    
T  1292364 -ttactacttgtgtttactttgatattgtttactacttttctttgctcc 1292317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 4743212 - 4743075
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  ||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||||||           
T  4743212 ctttggtgtgtttgtttctct--tctctc--tttatctttcgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttg------- 4743124  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
       |||||| ||||| | |||||| |||||||||| ||||||||||||||||    
T  4743123 ---ttattgcttgtgtttactttggtattggttaccactttcctttgctcca 4743075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 19491694 - 19491550
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    ||||||||||||||||| |    ||||| ||||||||||| |||||||||   ||||||  |||||||||||||||||||| ||||||||||| ||||||    
T  19491694 ttggtgtgtttgtttcttt----tctcactttatcttttgtttgtggttttgagctttttactttgattcctagattagatataggtgttgttattgttg 19491599  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     || ||  ||||| | |||||||||||| ||| |||||||||||||||||    
T  19491598 -ttgttacttgtgtttactttgatattgattaatactttcctttgctcca 19491550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 571 - 689
Target Start/End: Original strand, 10015277 - 10015395
Alignment:
Q  571 ttatcttttgcttgtggtttatg--cttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||||| ||  |||||| |||||||| ||| ||||||||||||| ||||| || ||| || ||| ||||| |||||||||||||||    
T  10015277 ttatcttttgcttgtggttt-tgaacttttcactttgattactaaattagatctaggtattgttattattgttt-ttgcttgtgttcactttgatattgg 10015374  T
Q  669 ttactactttcctttgctcca 689  Q
    ||| ||||||||| |||||||    
T  10015375 ttattactttcctctgctcca 10015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 3303668 - 3303518
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtg-gtttatgcttttctct----ttgattcctagattagatctaggtgttgttt 633  Q
    |||||||||||||||||  ||||||||||  |||||||||||||||||  ||| | |||||| ||    |||||||||||||||||||||||||| |||     
T  3303668 ctttggtgtgtttgttt--ctcttctctc--tttatcttttgcttgtgattttgtacttttcactttgattgattcctagattagatctaggtgtagtta 3303573  T
Q  634 ttgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || ||| || ||| ||||| |   ||||||||||||||| ||||||||||||||||    
T  3303572 ttattg-ttgttgcttgtgtttgttttgatattggttaccactttcctttgctcca 3303518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 5689441 - 5689588
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||||||||  ||||||  |||||||||| ||||||||||   ||||||| |||||||| ||| ||||||| ||| ||||||| || |    
T  5689441 ctttgatgtgtttgtttctct--tctctc--tttatcttttacttgtggttttgagcttttcactttgattactaaattagatttagatgttgttattat 5689536  T
Q  638 tgattattgtttgt-gctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| |||| | |  |||||||||||||||||||||||||||||||||    
T  5689537 tg-ttgttgcttgttgtttgctttgatattggttactactttcctttgctcca 5689588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 632
Target Start/End: Original strand, 18141986 - 18142078
Alignment:
Q  537 cactttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtt 632  Q
    |||||||||||| ||||||||||  |||||    ||||||||||||||||||||   ||||||| |||||||| ||||||||||| |||||||||||    
T  18141986 cactttggtgtgcttgtttctctgctctct----ttatcttttgcttgtggttttgagcttttcactttgattactagattagatgtaggtgttgtt 18142078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 682
Target Start/End: Complemental strand, 8965621 - 8965544
Alignment:
Q  603 ttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttactactttcctt 682  Q
    ||||||||||||||| |||||||| ||||| |||||| || ||| ||||| | |||||||||||||||||||| ||||||    
T  8965621 ttgattcctagattaaatctaggt-ttgttattgttg-ttgttgcttgtggttactttgatattggttactacgttcctt 8965544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 540 - 689
Target Start/End: Complemental strand, 32902180 - 32902034
Alignment:
Q  540 tttggtgtgtttgtttctct-cttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||| ||||||||||||||| |||||||   |||||||||||||| ||||||  || ||||| ||| | |||||||||||||||||||| ||||| ||||    
T  32902180 tttgctgtgtttgtttctcttcttctct---tttatcttttgcttttggttttgtgtttttcacttgg-ttcctagattagatctaggt-ttgttgttgt 32902086  T
Q  638 tgattattgtttgtgctcactttgatattggttactactt-tcctttgctcca 689  Q
    || || ||||||| | |  |||||||||| |||||||||| || |||||||||    
T  32902085 tg-ttgttgtttgaggttgctttgatattagttactacttctcttttgctcca 32902034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 629
Target Start/End: Original strand, 30291778 - 30291865
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatg--cttttctctttgattcctagattagatctaggtgtt 629  Q
    ||||||||||||||||  |||||||||||  ||||||||||||||||||||| ||  |||| | |||||||| ||||||||||| ||| ||||    
T  30291778 ctttggtgtgtttgtt--tctcttctctc--tttatcttttgcttgtggttt-tgaactttccactttgattactagattagatttagatgtt 30291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 666
Target Start/End: Original strand, 4162692 - 4162759
Alignment:
Q  595 ttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatatt 666  Q
    ||||| |||||||||||||||||||||||||| || || ||||||    ||||||||| | |||||||||||    
T  4162692 ttttcactttgattcctagattagatctaggttttattattgttg----ttgtttgtgattactttgatatt 4162759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 683
Target Start/End: Original strand, 8154020 - 8154095
Alignment:
Q  606 attcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttactactttccttt 683  Q
    |||||||||||| |||||||| ||||| || ||| || ||| ||||| | |||||||||||| |||||||||||||||    
T  8154020 attcctagattacatctaggt-ttgttattattg-ttgttgcttgtggttactttgatattgattactactttccttt 8154095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 8e-63; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 29991224 - 29991374
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  29991224 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggtttgtgcttttctctttgattcctatattagatctaggtgttgttattgtt 29991323  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  29991324 gattattacttgtgctcactttgatattggttactacttttctttgctcca 29991374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 35854088 - 35854237
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctca-ttttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||||||| |||| ||||||    
T  35854088 ttggtgtgtttgtttctctcttctctcccttttatcttgtgcttgtgttttatgcttttcactttgcttcctagattagatctaggtgctgttattgttg 35854187  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35854188 attattgtttgtgttcactttgatattggttactactttcctttgctcca 35854237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 23555211 - 23555362
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggt-ttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| || || ||||  |||||||||||||||||||||||||||||||| ||||    
T  23555211 ctttgatgtgtttgtttctctcttctctccttttatcttttgcttgtggtattgtgttttttactttgattcctagattagatctaggtgttgttattgt 23555310  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  23555311 tgattattgcttgtgttcactttgatattggttactactttcctttgctcca 23555362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 27347987 - 27348138
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||  || ||||| ||||||||||||||||||||||||||| |||| ||||    
T  27347987 ctttggtgtgtttgttcctctcttctctcactttatcttttgcttgtggttttgtgtttttcactttgattcctagattagatctaggtgctgttattgt 27348086  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  27348087 tgattattgtttgtgttcactttgatattggttgctactttcctttgctcca 27348138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 539 - 690
Target Start/End: Original strand, 25616024 - 25616177
Alignment:
Q  539 ctttggtgtgtttgtttctctcttct-ctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    |||||||||||||||||||||||||| |||  |||||||| ||||||||||||  |||||||| ||| |||||||||||||||||||||||||||| |||    
T  25616024 ctttggtgtgtttgtttctctcttcttctctctttatcttgtgcttgtggttttgtgcttttcacttcgattcctagattagatctaggtgttgttattg 25616123  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctccat 690  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  25616124 ttgattattgcttgtgttcactttgatattggttactactttcctttgctccat 25616177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 48489601 - 48489752
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||| |  |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||||    
T  48489601 ctttggtgtgtttgttcctctcttctcgccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgttattgt 48489700  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| |  || ||||||||||||||||||||||||||||||||||||    
T  48489701 tgattattgctcatgttcactttgatattggttactactttcctttgctcca 48489752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 4178944 - 4179094
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||| |||||    
T  4178944 ctttggtgtgtttgtttctctcttctctccttttatattttgcttgtggtttgtgtttttcactttgattcctagattagatctaggtgctgttattgtt 4179043  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||    |||||||| |||||||||||||||||||||||||||    
T  4179044 gattattgcttacattcactttgttattggttactactttcctttgctcca 4179094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 542 - 689
Target Start/End: Original strand, 43864417 - 43864565
Alignment:
Q  542 tggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttga 640  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| |||||||    
T  43864417 tggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttga 43864516  T
Q  641 ttattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||| ||||| |||||||||||||| |||| |||||||||| |||||    
T  43864517 ttattgcttgtgttcactttgatattgattaccactttcctttactcca 43864565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 47676134 - 47675984
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||| || |    
T  47676134 ctttggtgtgtttgttcctctcttctctccatttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattat 47676035  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  47676034 tg-ttgttgcttgtgttcactttgatattggttactactttcctttgctcca 47675984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 48408978 - 48409128
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctca-ttttatctttt-gcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||| |||| |||||    
T  48408978 ttggtgtgtttgtttctctcttctctcccttttatctttttgcttgtgatttgtgcttttcactttgatacctagattagatctaggtgctgttattgtt 48409077  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||  ||||||||| |||||||||||||||||||||||||||    
T  48409078 gattattgcttgcactcactttgttattggttactactttcctttgctcca 48409128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 41649009 - 41648861
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||| || | ||||    
T  41649009 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttgtggttttgagcttttcactttgattcctagattagatctaggtgctgctattgt 41648912  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  41648911 tg-ttattgcttgtgttcactttgatattagttactactttcctttgctcca 41648861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 4586331 - 4586482
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||| ||||||||||| ||||||||||||  ||||||||||| |||||||||  |||||||| |||||||| ||||||||||||||||||||||| ||||    
T  4586331 ctttcgtgtgtttgttcctctcttctctccctttatcttttgtttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattgt 4586430  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | ||||||| ||||| ||||||||| ||||||||| ||||||||||||||||    
T  4586431 ttattattgcttgtgttcactttgaaattggttaccactttcctttgctcca 4586482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 18126814 - 18126967
Alignment:
Q  539 ctttggtgtgtttgtttctctctt--ctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgttttt 635  Q
    |||||||||||||||| |||| ||  |||||  |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||    
T  18126814 ctttggtgtgtttgttcctctattttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgttatt 18126913  T
Q  636 gttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     |||||||||| ||||| |||||||||||||| ||||||||||||||| |||||    
T  18126914 cttgattattgcttgtgttcactttgatattgattactactttcctttactcca 18126967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 26417488 - 26417637
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||||||||||| ||||||||||||  |||||||||||||||||||||   ||||||| ||||||||| ||||||| ||||||||| |||| ||||||    
T  26417488 ttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattcatagattatatctaggtgctgttattgttg 26417587  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||| ||||| | |||||||||||||||||||||||||||| |||||    
T  26417588 attattgcttgtggttactttgatattggttactactttcctttactcca 26417637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 31732967 - 31732816
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||| ||||||| ||||||||||||  |||||||||||||||||||||  |||||||| |||||||| ||||||||||||||   |||||| ||||    
T  31732967 ctttggtgagtttgttcctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaaaggttgttattgt 31732868  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||| |||||||||||||||| |||||||||    
T  31732867 tgattattgcttgtgttcactttgaaattggttactactttcatttgctcca 31732816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 47673942 - 47673792
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| ||| | |||||| |||||||| ||||||||||||||||||||||| || |    
T  47673942 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtacttttcactttgattactagattagatctaggtgttgttattat 47673843  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||||||||| |||||||||||||||||||||||||| |||| ||||    
T  47673842 tg-ttgttgtttgtgttcactttgatattggttactactttcttttgttcca 47673792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 25766954 - 25766804
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctca-ttttatctttt-gcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||| |||||||  ||||||||||| ||||||| ||| || ||||| ||||||| ||||||||||||||||||| |||| |||||    
T  25766954 ttggtgtgtttgtttctctattctctcccttttatctttttgcttgtgatttgtgtttttcactttgatacctagattagatctaggtgctgttattgtt 25766855  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||| |||||||||| |||||||||||||||| ||||||||||    
T  25766854 gattattgcttgcgctcactttgttattggttactacttttctttgctcca 25766804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 558 - 688
Target Start/End: Original strand, 48491765 - 48491896
Alignment:
Q  558 ctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctca 656  Q
    ||||||||||  |||||||||||||||||||||  ||||||||  ||||||||||| |||||||||||| |||||| ||||||||||||| ||||| |||    
T  48491765 ctcttctctccctttatcttttgcttgtggttttgtgcttttcattttgattcctatattagatctaggcgttgttattgttgattattgcttgtgttca 48491864  T
Q  657 ctttgatattggttactactttcctttgctcc 688  Q
    ||||||||||||||||||||||||||| ||||    
T  48491865 ctttgatattggttactactttcctttactcc 48491896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 539 - 684
Target Start/End: Original strand, 39731540 - 39731687
Alignment:
Q  539 ctttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  ||||||  |||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||    
T  39731540 ctttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtggtttgtgcttttcactttgtttcctagattagatctaggtgttgttattg 39731639  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttg 684  Q
    |||||||||| |||  | ||||||| |||||||||||||||| |||||    
T  39731640 ttgattattgcttgcacccactttgttattggttactacttttctttg 39731687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 41317432 - 41317286
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||    |||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  41317432 ctttggtgtgtttgtttctc----ctctctctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 41317337  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  41317336 tg-ttgttgcttgtgttcactttgatattggttactactttcctttgctcca 41317286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 495981 - 495835
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||| |  ||||||  ||||||| ||||||||| |||  |  ||||| |||||||||||||||||||||||||||||||| ||||    
T  495981 ctttggtgtgtttgtttcttt--tctctc--tttatctcttgcttgtgattttctatttttcactttgattcctagattagatctaggtgttgttattgt 495886  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  495885 tg-ttattgtttgtgtttactttgatattggttactactttcctttgctcca 495835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 14069831 - 14069681
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||  ||||||||||||  |||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  14069831 ctttggtgtgtttgtccctctcttctctccctttatcttgtgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 14069732  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | ||| ||| ||||| | ||||||| ||| ||||||||||||||||||||||    
T  14069731 t-attgttgcttgtgtttactttgaaattagttactactttcctttgctcca 14069681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 14379859 - 14379709
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||  ||||||||||||  |||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  14379859 ctttggtgtgtttgtccctctcttctctccctttatcttgtgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 14379760  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | ||| ||| ||||| | ||||||| ||| ||||||||||||||||||||||    
T  14379759 t-attgttgcttgtgtttactttgaaattagttactactttcctttgctcca 14379709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 19502349 - 19502499
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||| |||  | ||||| |||||||| ||||||||||||||||||||||| || |    
T  19502349 ctttggtgtgtttgtttctctcttctctccctttattttgtgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattat 19502448  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||  | ||||||| ||||||||||||||||||||||||||    
T  19502449 tg-ttgttgcttgtatttactttgaaattggttactactttcctttgctcca 19502499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 1113827 - 1113973
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||    ||||  |||||||||||||||||||||  || |||||  |||||||||||||||||||||||||||| || ||||    
T  1113827 ctttggtgtgtttgtttctct----tctccctttatcttttgcttgtggttttgtgtttttcattttgattcctagattagatctaggtgttattattgt 1113922  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||| ||||| | ||||||||||| ||||| ||||||||||||||||    
T  1113923 tg-ttattgcttgtgtttactttgatattagttaccactttcctttgctcca 1113973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 8153512 - 8153658
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||| |||||||  ||||||  |||||||||||||||||||||   ||||||| ||||||||  ||||| |||||||||||||||| || |    
T  8153512 ctttggtgtgtttatttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattattagatcagatctaggtgttgttattat 8153607  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| |||||||||||||||||||| |||||||||||||||||||||    
T  8153608 tg-ttgttgcttgtgctcactttgatattgattactactttcctttgctcca 8153658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 36146406 - 36146259
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||| ||||||| || |    
T  36146406 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggtttttagcttttcactttgattactagattagatctagatgttgttattat 36146311  T
Q  638 tgattattgtttg-tgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||| || |  |||||||||||||||||||||||||||||||||    
T  36146310 tg-ttgttgcttgttgtttgctttgatattggttactactttcctttgctcca 36146259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 38671220 - 38671072
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||| |||  ||||||| |||||||| ||||||| ||||||||||||||  || |    
T  38671220 ctttggtgtgtttgtttctctcttctctc--cttatcttttgcttgtggttttgagcttttcactttgattactagatttgatctaggtgttgtcattat 38671123  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |  ||| ||||| |||||||||| || ||||||| ||||||||||||||    
T  38671122 tg-tcgttgcttgtgttcactttgatttttgttactattttcctttgctcca 38671072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 579 - 684
Target Start/End: Complemental strand, 30024714 - 30024609
Alignment:
Q  579 tgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttactactt 677  Q
    ||||||||||||  |||||||| |||||||| ||||||||||||||||||||||| || ||| || ||| ||||| | ||||||| ||||||||||||||    
T  30024714 tgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgaaattggttactactt 30024616  T
Q  678 tcctttg 684  Q
    |||||||    
T  30024615 tcctttg 30024609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 541 - 646
Target Start/End: Complemental strand, 43504148 - 43504044
Alignment:
Q  541 ttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||| |||||||  ||||||  |||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||   | ||||||||||    
T  43504148 ttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtgttttatgcttttcactttgattcctagattagatcta---gctgtttttgtt 43504052  T
Q  639 gattattg 646  Q
    ||||||||    
T  43504051 gattattg 43504044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 576 - 689
Target Start/End: Complemental strand, 31105357 - 31105247
Alignment:
Q  576 ttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttacta 674  Q
    |||||||||||||||   ||||||| |||||||||||||||||||||| ||||||||| ||||||    ||| ||||| | |||||||||||| ||||||    
T  31105357 ttttgcttgtggttttgagcttttcactttgattcctagattagatcttggtgttgttattgttg----ttgcttgtgtttactttgatattgattacta 31105262  T
Q  675 ctttcctttgctcca 689  Q
    ||||||||| |||||    
T  31105261 ctttcctttactcca 31105247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 678
Target Start/End: Complemental strand, 23565058 - 23564927
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgc--ttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||||||||||||||||||    ||||  ||||||||||||||||||||| ||   ||||| |||||||| ||||||||||||||||| ||||| |||||    
T  23565058 ttggtgtgtttgtttctct----tctctatttatcttttgcttgtggtttttgtgattttcactttgatttctagattagatctaggttttgttattgtt 23564963  T
Q  639 gattattgtttgtgctcactttgatattggttactacttt 678  Q
    |    ||| ||||| | |||||||||||||| ||||||||    
T  23564962 g----ttgcttgtggttactttgatattggtcactacttt 23564927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 539 - 686
Target Start/End: Complemental strand, 24525500 - 24525356
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| ||| ||| ||||||||||||||| || |    
T  24525500 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactaaatttgatctaggtgttgttattat 24525405  T
Q  638 tgattattgtttg-tgctcactttgatattggttactactttcctttgct 686  Q
    || || ||| ||| || |  ||||||||||| |||||||||| |||||||    
T  24525404 tg-ttgttgcttgttgtttgctttgatattgattactacttttctttgct 24525356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 23344145 - 23344286
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    ||||||||| |||||||||  ||||||  ||||||| || |||| |||||  || ||||| ||||||||| ||||||| |||||||| ||||| ||||||    
T  23344145 ttggtgtgtatgtttctct--tctctc--tttatctctttcttgcggttttgtgtttttcactttgattcgtagattaaatctaggttttgttattgttg 23344240  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
        ||| ||||| | |||| |||||||||||||||||||||||||||||    
T  23344241 ----ttgcttgtggttacttggatattggttactactttcctttgctcca 23344286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 616 - 683
Target Start/End: Complemental strand, 12097084 - 12097018
Alignment:
Q  616 tagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttactactttccttt 683  Q
    ||||||||||||||||| || ||| || ||| ||||| ||||||||||||||||||||||||||||||    
T  12097084 tagatctaggtgttgttgttattg-ttgttgattgtgttcactttgatattggttactactttccttt 12097018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 632
Target Start/End: Original strand, 31519115 - 31519155
Alignment:
Q  592 tgcttttctctttgattcctagattagatctaggtgttgtt 632  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  31519115 tgcttttcactttgattcctagattagatctaggtgttgtt 31519155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 539 - 618
Target Start/End: Complemental strand, 12097865 - 12097789
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattag 618  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||| |||  ||||||| |||||||| |||||||||    
T  12097865 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattag 12097789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 590
Target Start/End: Complemental strand, 2759193 - 2759144
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttt 590  Q
    ||||||||||| |||||||||||||||  |||||||||||||| ||||||    
T  2759193 ttggtgtgtttctttctctcttctctccctttatcttttgcttatggttt 2759144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 37408629 - 37408780
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  37408629 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtgatttagtgcttttcactttgattcctagattagatctaggtgctgttattgt 37408728  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37408729 tgattattgtttgtgctcactttaatattggttactactttcctttgctcca 37408780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5260320 - 5260170
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||    
T  5260320 ctttggtgtgtttgtttctctcttctctccttttatattttgcttgtggtttgtgcttttcactttgattcctaaattagatctaggtgttgttattgtt 5260221  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||  ||||||||| |||||||||||||||||||||||||||    
T  5260220 gattattgcttgcactcactttgttattggttactactttcctttgctcca 5260170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 19683886 - 19683735
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||||| |||| |||||||||||||||||||||| |||| ||||    
T  19683886 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgtttttcacttttattcctagattagatctaggtgctgttattgt 19683787  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  19683786 tgattattgcttgtgttcactttgatattggttactactttcctttgctcca 19683735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5258141 - 5257991
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||    
T  5258141 ctttggtgtgtttgtttctctcttctctccttttatattttgcttgtggtttgtgcttttcactttgattcctagattagatctaggtgctgttattgtt 5258042  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||   |||||||| |||||||||||||||||||||||||||    
T  5258041 gattattgcttgcattcactttgttattggttactactttcctttgctcca 5257991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 545 - 689
Target Start/End: Original strand, 7762442 - 7762587
Alignment:
Q  545 tgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgatta 643  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||||||||||| ||||||||||||||||||| ||||||||||    
T  7762442 tgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattcctaaattagatctaggtgttgttattgttgatta 7762541  T
Q  644 ttgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||  ||||| ||||||||||||||||||||||||||||||||||||    
T  7762542 ttacttgtgttcactttgatattggttactactttcctttgctcca 7762587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 9636120 - 9635971
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctca-ttttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||    
T  9636120 ttggtgtgtttgtttctctctgctctcccttttatcttgtgcttgtgatttatgcttttcactttgattcctagattagatctaggtgctgttattgttg 9636021  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  9636020 attattgcttgtgttcactttgatattggttactactttcctttgctcca 9635971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 540 - 689
Target Start/End: Complemental strand, 9634818 - 9634668
Alignment:
Q  540 tttggtgtgtttgtttctctcttctctca-ttttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||| |||||||||||||||||||||||  ||||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||| |||| |||||    
T  9634818 tttgttgtgtttgtttctctcttctctcccttttatcttgtgcttgtgatctatgcttttcactttgattcctagattagatctaggtgctgttattgtt 9634719  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  9634718 gattattgcttgtgttcactttgatattggttactactttcctttgctcca 9634668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 539 - 683
Target Start/End: Original strand, 7764635 - 7764780
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||  |||||||| |||||||||| |||||||||||||||| |||| ||||    
T  7764635 ctttggtgtgtttgtttctctcttctctccttttatcttttgtttgtggttttgtgcttttcactttgattccaagattagatctaggtgctgttattgt 7764734  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttccttt 683  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  7764735 tgattattgcttgtgttcactttgatattggttactactttccttt 7764780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 539 - 687
Target Start/End: Original strand, 45095334 - 45095482
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||||| || ||||||||||| ||||||| |||||||||||||||||||||| || ||| ||||||||||| ||||||||||||| ||| |||| |||||    
T  45095334 ctttggcgtatttgtttctctattctctccttttatcttttgcttgtggtttgtgttttactctttgattcatagattagatctatgtgctgttattgtt 45095433  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctc 687  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45095434 gattattgcttgtgctcactttgatattggttactactttcctttgctc 45095482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 539 - 686
Target Start/End: Original strand, 9581453 - 9581601
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||||||||||||||||  ||||| || ||||||||||||  |||||||| ||||||||| ||||||||||||||||| |||| ||||    
T  9581453 ctttgatgtgtttgtttctctcttctctccctttattttgtgcttgtggttttgtgcttttcactttgattcatagattagatctaggtgctgttattgt 9581552  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgct 686  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9581553 tgattattgcttgtgctcactttgatattggttactactttcctttgct 9581601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 539 - 690
Target Start/End: Original strand, 51398984 - 51399136
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||| |||| ||||    
T  51398984 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtacttttcactttgattcctagattagatctaggtgctgttattgt 51399083  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctccat 690  Q
    ||||||||| | |||||||||||||||||| || |||||||||||||||||||    
T  51399084 tgattattgctagtgctcactttgatattgttttctactttcctttgctccat 51399136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 40735553 - 40735703
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||| |||||| |||||||||||| ||| ||||||||||||||| ||| |||||||| ||||| |||||| |||||||||||||| |||| ||||    
T  40735553 ctttggtgtatttgttcctctcttctctccttt-atcttttgcttgtggatttgtgcttttcactttggttcctatattagatctaggtgctgttattgt 40735651  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40735652 tgattattgtttgtgttcactttgatattggttactactttcctttgctcca 40735703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 29811038 - 29811189
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||  |||||||||||  |||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||| |||| ||||    
T  29811038 ctttggtgtgtttgttcatctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattcctagattagatctaggtgctgttattgt 29811137  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| || |||||| ||||||||||||||||||||||||||    
T  29811138 tgattattgcttgtgttctctttgaaattggttactactttcctttgctcca 29811189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 5236455 - 5236312
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| | | || ||||    
T  5236455 ctttggtgtgtttgttcctctcttctctccttttatcttttgcttgtggatttgtgcttttcactttgattcctagattagatctaggagctcttattgt 5236356  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcct 681  Q
    ||||||||| ||||| |||||||||||| | |||||||||||||    
T  5236355 tgattattgcttgtgttcactttgatatcgattactactttcct 5236312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 761017 - 761165
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||| || | ||||    
T  761017 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttgtggttttgagcttttcactttgattcctagattagatctaggtgctgctattgt 761114  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||| ||| | |||||||||| |||||||||||||||||||||||||    
T  761115 tg-ttattgcttgagttcactttgattttggttactactttcctttgctcca 761165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 40734668 - 40734818
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||| ||||||||| |||||||||||| ||| ||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||| |||| || |    
T  40734668 ctttggagtgtttgttcctctcttctctccttt-atcttttgcttgtggatttgtgctttgcactttgattcctagattagatctaggtgctgttatttt 40734766  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | ||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  40734767 ttattatttcttgtgttcactttgatattggttactactttcctttgctcca 40734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 29813233 - 29813382
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||| |||||||||| |  ||||||||||| |||||||||   ||||||| ||||||||| ||||||||||||||||| |||| ||||    
T  29813233 ctttgatgtgtttgttcctctcttctccc--tttatcttttggttgtggttttgagcttttcactttgattcttagattagatctaggtgctgttattgt 29813330  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  29813331 tgattattgtttgtgttcactttgatattagttactacttttctttgctcca 29813382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 570 - 689
Target Start/End: Complemental strand, 22834973 - 22834854
Alignment:
Q  570 tttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| |||||| |||||   |||| | |||||||||||||    
T  22834973 tttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgttattgttg-ttattacctgtgtttactttgatattgg 22834875  T
Q  669 ttactactttcctttgctcca 689  Q
    |||||||||||||||||||||    
T  22834874 ttactactttcctttgctcca 22834854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 563 - 689
Target Start/End: Complemental strand, 23200109 - 23199984
Alignment:
Q  563 ctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttga 662  Q
    ||||| ||||||||| |||||||||||| || |||||  |||| ||||||||||||||||||||||| || ||||||||||||| |||  |||||||||     
T  23200109 ctctccttttatcttatgcttgtggtttgtgtttttcattttgtttcctagattagatctaggtgtt-ttattgttgattattgcttgcactcactttgt 23200011  T
Q  663 tattggttactactttcctttgctcca 689  Q
    |||||||||||||||||||||||||||    
T  23200010 tattggttactactttcctttgctcca 23199984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 541 - 686
Target Start/End: Complemental strand, 21350999 - 21350861
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtt-tatgcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||||||||||||||||    ||||| |||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  21350999 ttggtgtgtttgtttctct----tctcactttatcttatgcttgtggttatgagcttttcactttgattcctagattagatctaagtgttgttattgttg 21350904  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgct 686  Q
        ||||||||| | |||||||||||||||||||||||||||||||    
T  21350903 ----ttgtttgtgtttactttgatattggttactactttcctttgct 21350861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 29682529 - 29682677
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||| ||||||||||||||| |  |||||||||||||||||||||   | ||||| ||||||||||||| ||||||||||||| || | ||||    
T  29682529 ctttggtgtgtatgtttctctcttctccc--tttatcttttgcttgtggttttgagtttttcactttgattcctaggttagatctaggtgctgctattgt 29682626  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||| ||||  ||||||| || ||| |||||||||||||||||||||    
T  29682627 tg-ttattgcttgtattcactttaattttgattactactttcctttgctcca 29682677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 539 - 691
Target Start/End: Complemental strand, 44700477 - 44700329
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||| ||||||||||||||||  ||||||  |||||| ||||||||||||||   | ||||| |||||||| ||||||||||||||||||||||| || |    
T  44700477 ctttcgtgtgtttgtttctct--tctctc--tttatcctttgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattat 44700382  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctccatg 691  Q
    || || ||| ||||| | ||||||||||||||||||||||| ||||||||||||    
T  44700381 tg-ttgttgcttgtgtttactttgatattggttactacttttctttgctccatg 44700329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 23391907 - 23391760
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgctttt-ctctttgattcctagattagatctaggtgttgtttttg 636  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||  || |||| | |||||||| ||||||||||||||||||||||| ||     
T  23391907 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgtgttttttcactttgattactagattagatctaggtgttgttatta 23391812  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||| || ||  ||||| |||||||||||||||||| ||||||||||| |||||    
T  23391811 ttg-ttgtttcttgtgttcactttgatattggttattactttccttttctcca 23391760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 29196384 - 29196237
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| | ||||||||||||||||||||| || |    
T  29196384 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattaccagattagatctaggtgttgttattat 29196289  T
Q  638 tgattattgtttg-tgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||| || |  |||||||||||||||||||||||||||||||||    
T  29196288 tg-ttgttgcttgttgtttgctttgatattggttactactttcctttgctcca 29196237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 539 - 690
Target Start/End: Original strand, 31314615 - 31314762
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| |||||||| || ||||||||||| || |    
T  31314615 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattatatttaggtgttgttattat 31314710  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctccat 690  Q
    || || ||| ||||| | ||||| ||||| |||| ||||||||||||||||||    
T  31314711 tg-ttgttgcttgtgtttactttaatattagttattactttcctttgctccat 31314762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 9666464 - 9666317
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  |||||    ||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  9666464 ctttggtgtgtttgtttctcttatctct----ttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 9666369  T
Q  638 tgattattgtttg-tgctcactttgatattggttactactttcctttgctcca 689  Q
    || |  ||| ||| |  |  |||||||||||||||||||||||||||||||||    
T  9666368 tg-tagttgcttgttatttgctttgatattggttactactttcctttgctcca 9666317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 23197936 - 23197791
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctca--ttttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  ||||||||||   ||||||||| |||||||||||| || |||||  |||| ||||||||||||||||| ||||| || |||    
T  23197936 ctttggtgtctttgttttcctcttctctctccttttatcttgtgcttgtggtttgtgtttttcattttgtttcctagattagatctatgtgtt-ttattg 23197838  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||      ||||  |||||||||||||||||||||||||||    
T  23197837 ttgattattgcttg------ctttattattggttactactttcctttgctcca 23197791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 689
Target Start/End: Complemental strand, 39153331 - 39153212
Alignment:
Q  570 tttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||| ||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |||  |   | ||||| | ||||||| |||||    
T  39153331 tttatcttgtgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattattg-ctgccgcttgtgtttactttgaaattgg 39153233  T
Q  669 ttactactttcctttgctcca 689  Q
    |||||||||||||||||||||    
T  39153232 ttactactttcctttgctcca 39153212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 607 - 689
Target Start/End: Original strand, 801328 - 801411
Alignment:
Q  607 ttcctagattagatctaggtgttgtttt-tgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||  | ||||||  || ||||||||||||||||||||||||    
T  801328 ttcctagattagatctaggtgctgttttttgttgattattgcttgcacacactttattagtggttactactttcctttgctcca 801411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 7779998 - 7779848
Alignment:
Q  541 ttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||| |||||||  ||||||  |||| ||||||||| ||||||||  || || ||||    ||| ||||||||||||||||||||| ||||||||||    
T  7779998 ttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtgtattgtgttttttcacttgtttcctagattagatctaggtgctgtttttgtt 7779899  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||  | ||||||| |  ||||||| ||| ||||||||||||    
T  7779898 gattattgcttgcacacactttgttggtggttaccactctcctttgctcca 7779848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 545 - 689
Target Start/End: Complemental strand, 51352125 - 51351987
Alignment:
Q  545 tgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgatta 643  Q
    |||||||||||||||  ||||||  |||||||||| ||||||||||  || |||||  ||||||||||||||||||||||||| ||||| |||||| |      
T  51352125 tgtgtttgtttctct--tctctc--tttatcttttacttgtggttttgtgtttttca-tttgattcctagattagatctaggt-ttgttattgttgctgc 51352032  T
Q  644 ttgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | | ||||| | ||||||||||||||||| ||||||||||||||||    
T  51352031 t-gcttgtgattactttgatattggttaccactttcctttgctcca 51351987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 16499199 - 16499335
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||| |||||||||||  ||||||  |||||||||||||||||||||  | ||||||  ||||||||||||||||||| |||||||||           
T  16499199 ctttggtgtatttgtttctct--tctctc--tttatcttttgcttgtggttttgtacttttca-tttgattcctagattagatttaggtgttg------- 16499286  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
       |||||| ||||| | |||||||| |||||||||||||||||||||||||    
T  16499287 ---ttattgcttgtgtttactttgatgttggttactactttcctttgctcca 16499335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 689
Target Start/End: Complemental strand, 27305703 - 27305564
Alignment:
Q  544 gtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgatt 642  Q
    ||||||||||||||||    ||||  ||||||||||| |||||||||  || ||||| |||| | ||||||||||||||||||| | ||| |||||| ||    
T  27305703 gtgtgtttgtttctct----tctctatttatcttttgtttgtggttttgtgtttttcacttt-actcctagattagatctaggt-tggttattgttg-tt 27305611  T
Q  643 attgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     ||| ||||  | ||||||||||||||||||||||||||||||||||    
T  27305610 gttgcttgttgttactttgatattggttactactttcctttgctcca 27305564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 32891276 - 32891411
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||||||||||||||||  |||||| ||  ||||||||||||||||||   | ||||| |||||||||||| |||||||||||||||||             
T  32891276 ttggtgtgtttgtttctct--tctctcctt--atcttttgcttgtggttttgagtttttcactttgattcctatattagatctaggtgttg--------- 32891362  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     || ||| ||||| | ||||| ||||||||||||||||||||||||||||    
T  32891363 -ttgttgcttgtgtttactttaatattggttactactttcctttgctcca 32891411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 689
Target Start/End: Complemental strand, 2075057 - 2074929
Alignment:
Q  557 tctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctc 655  Q
    |||||||||||  |||||||||||||||||||||  || ||||| ||| | ||||||||||| |||| ||| || || ||||| ||| ||| ||||| |     
T  2075057 tctcttctctc--tttatcttttgcttgtggttttgtgtttttcactt-gtttcctagattaaatctgggt-ttattattgtt-attgttgcttgtggtt 2074963  T
Q  656 actttgatattggttactactttcctttgctcca 689  Q
    | ||||||||||||||||||||||||||||||||    
T  2074962 attttgatattggttactactttcctttgctcca 2074929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 632
Target Start/End: Complemental strand, 32744434 - 32744351
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtt 632  Q
    ||||||||||||||||||||   |||||    ||||||||||||||||||||      ||| |||||||| |||||||||||||||||||||||    
T  32744434 ctttggtgtgtttgtttctcatatctct----ttatcttttgcttgtggttt------ttcactttgatttctagattagatctaggtgttgtt 32744351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 646
Target Start/End: Original strand, 6716742 - 6716781
Alignment:
Q  607 ttcctagattagatctaggtgttgtttttgttgattattg 646  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  6716742 ttcctagattagatctaggtggtgttttggttgattattg 6716781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 689
Target Start/End: Original strand, 37406981 - 37407010
Alignment:
Q  660 tgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||||||||||||||||||    
T  37406981 tgatattggttactactttcctttgctcca 37407010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 621
Target Start/End: Complemental strand, 53921496 - 53921422
Alignment:
Q  544 gtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatc 621  Q
    ||||||||||||||||  ||||||  ||||| ||||| |||||||||   ||||||| |||||||||||||||||||||    
T  53921496 gtgtgtttgtttctct--tctctc--tttatattttgtttgtggttttgagcttttcactttgattcctagattagatc 53921422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 5e-58; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 25412931 - 25413081
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||||    
T  25412931 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggtttgtgcttttctctttgattcctagattagatataggtgctgttattgtt 25413030  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||||||||||| ||||||| |||||| ||||||||||||||    
T  25413031 gattattgcttgtgctcacttggatattgattactaatttcctttgctcca 25413081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 30682921 - 30682770
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||  ||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  30682921 ctttggtgtgtttgttcctctcttctctccttttatcttttgcttgtgaatttgtgcttttcactttgattcctagattagatctaggtgttgttattgt 30682822  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  30682821 tgattattgcttgtgttcactttgatattggttactactttcctttgctcca 30682770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 13343231 - 13343381
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  13343231 ctttgatgtgtttgtttctctcttctctccttttatattttgcttgtggtttgtgcttttcactttgattcctagattagatctaggtgttgttattgtt 13343330  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||   |||||||| |||||||||||||||||||||||||||    
T  13343331 gattattgcttgcattcactttgttattggttactactttcctttgctcca 13343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 30182759 - 30182909
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||| ||||| |||||||||||||||||||||||||| |||||    
T  30182759 ctttggtgtgtttgtttctctcttctctccttttatcttgtgcttgtgttttgtgcttttcactttgtttcctagattagatctaggtgttgttattgtt 30182858  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||   |||||||| |||||||||||||||||||||||||||    
T  30182859 gattattgtttgcattcactttgttattggttactactttcctttgctcca 30182909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 36074040 - 36073890
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||| |||||    
T  36074040 ctttggtgtgtttgtttctctcttctctccttttatgttttgcttgtgatttgtgcttttcactttgattcctagattagatctaggtgctgttattgtt 36073941  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||   |||||||| ||||||||| |||||||||||||||||    
T  36073940 gattattgcttgcattcactttgttattggttattactttcctttgctcca 36073890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 39468547 - 39468396
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||| ||||||||||| ||||||||||||  |||||||| |||| |||||||  |||||||| |||||||| |||||||||||||||||| |||| ||||    
T  39468547 ctttagtgtgtttgttcctctcttctctccctttatcttgtgctcgtggttttgtgcttttcactttgatttctagattagatctaggtgctgttattgt 39468448  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39468447 tgattattgtttgtgttcactttgatattggttactactttcctttgctcca 39468396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 540 - 689
Target Start/End: Original strand, 13239923 - 13240072
Alignment:
Q  540 tttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||| |||||||| ||||||||||||||||||||||| |||||    
T  13239923 tttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgtttttcactttgattactagattagatctaggtgttgttattgtt 13240022  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | || ||| ||||| | ||||| | |||||||||||||||||||| |||||    
T  13240023 g-ttgttgcttgtgtttactttaaaattggttactactttcctttactcca 13240072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 16409648 - 16409800
Alignment:
Q  539 ctttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  ||||||  |||| ||||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||    
T  16409648 ctttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtgttttatgcttttcactttgtttcctagattagatctaggtgttgttattg 16409747  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||  | ||||||| || ||||||||||||||||||||||||    
T  16409748 ttgattattgcttgcacccactttgttagtggttactactttcctttgctcca 16409800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 42426233 - 42426083
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||| ||||||||||| ||||||||||||  |||||||||||||||||| |||  ||||||| |||||||| ||||||||||||||||||||||| || |    
T  42426233 cttttgtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 42426134  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||| | ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  42426133 tga-tgttgcttgtgttcactttgatattggttactactttcttttgctcca 42426083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 26178055 - 26178207
Alignment:
Q  539 ctttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  ||||||  |||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||| |      
T  26178055 ctttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtgttttatgcttttcactttgattcctagattagatctaggtgttgttatca 26178154  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||  | ||||||| || ||||||||||||||||||||||||    
T  26178155 ttgattattgcttgcacacactttgttagtggttactactttcctttgctcca 26178207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 42428428 - 42428278
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||| |||||||||||  ||| |||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  42428428 ctttagtgtgtttgttcttcttttctctccctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 42428329  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | ||| ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  42428328 t-attgttgcttgtgttcactttgatattggttactactttcctttgctcca 42428278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 33831850 - 33831999
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgctttt-ctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||| |||  |||||| | |||||||||||||||||||| |||||| || | |||    
T  33831850 ctttggtgtttttgtttctctcttctctc--tttatcttttgcttgtggctttgagctttttcactttgattcctagattagatttaggtgctgctattg 33831947  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||| |||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  33831948 ttg-ttattgcttgtgttcactttgattttggttactactttcctttgctcca 33831999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5887432 - 5887282
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgctt--gtggttt-atgcttttctctttgattcctagattagatctaggtgttgttttt 635  Q
    |||||||||||||||||||||||||||||  ||||||||||||||  ||||||| | | |||||  ||||||| ||||||||||| ||||||||||| ||    
T  5887432 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttttgtggttttaagtttttcattttgattactagattagatttaggtgttgttatt 5887335  T
Q  636 gttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     ||| || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  5887334 attg-ttgttgcttgtgttcactttgatattggttactactttcctttgctcca 5887282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 28750653 - 28750503
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||| ||| |||||||| ||| |||| ||||||||||||||||||||||| || |    
T  28750653 ctttggtgtgtttgttcctctcttctctccctttatattttgcttgtggttttgtgcttttcacttggattactagattagatctaggtgttgttattat 28750554  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| | ||||| | ||||||||||||||||||||||||||    
T  28750553 tg-ttgttgcttgtgtttactttaaaattggttactactttcctttgctcca 28750503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 8565943 - 8565795
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| || ||     
T  8565943 ttggtgtgtttgttt-tctcttctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattatt- 8565848  T
Q  640 attattgt---ttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||| ||||   ||||| |||||||| |||||||||||||||||||||||||||    
T  8565847 attgttgttgcttgtgttcactttgttattggttactactttcctttgctcca 8565795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 26170935 - 26171087
Alignment:
Q  539 ctttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  ||||||  |||| ||||||||| |||||||| ||||||||||||  ||||||||||||||||||||||||||||||| |      
T  26170935 ctttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtgttttatgcttttcattttgattcctagattagatctaggtgttgttatca 26171034  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | |||||||| |||  | ||||||| || || |||||||||||||||||||||    
T  26171035 tcgattattgcttgcacacactttgttagtgcttactactttcctttgctcca 26171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 539 - 685
Target Start/End: Original strand, 19806533 - 19806679
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||| ||||||||| ||||||||||||  ||||||||||||||||||||| | ||||||| |||||||| ||||||||||| ||||||||||| || |    
T  19806533 ctttggggtgtttgttcctctcttctctccctttatcttttgcttgtggtttttagcttttcactttgattactagattagatttaggtgttgttattat 19806632  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgc 685  Q
    ||  |||||  | || ||||||| | ||||||||||||||||||||||    
T  19806633 tg-ctattgcctatgttcactttaaaattggttactactttcctttgc 19806679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 539 - 677
Target Start/End: Original strand, 37439312 - 37439450
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||| ||| ||||||||  ||||||| |||||||||| |||||||||||| || |    
T  37439312 ctttggtgtgtttgtttctctcttctctccctttatcttatgcttgtggttttgtgcttttcattttgattactagattagacctaggtgttgttattat 37439411  T
Q  638 tgattattgtttgtgctcactttgatattggttactactt 677  Q
    || || ||| ||||| | ||||||| ||||||||||||||    
T  37439412 tg-ttgttgcttgtgtttactttgaaattggttactactt 37439450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 538195 - 538341
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||| |||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||| ||||||| || |    
T  538195 ctttggtgtgtttctttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctagatgttgttattat 538290  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| | ||||||| |||||||| |||||||||||||||||    
T  538291 tg-ttgttgcttgtgtttactttgaaattggttattactttcctttgctcca 538341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 31183141 - 31183294
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttg-----cttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtt 632  Q
    |||||||||||||||||||||||||||||  |||||||||||     ||||||||||   ||||||| |||||||| ||||||||||| |||||||||||    
T  31183141 ctttggtgtgtttgtttctctcttctctc--tttatcttttgaattgcttgtggttttgagcttttcactttgattactagattagatataggtgttgtt 31183238  T
Q  633 tttgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     || ||  || ||| ||||| || |||||||||| ||||||||||||||||||||||    
T  31183239 attattt-ttgttgcttgtgttccctttgatattagttactactttcctttgctcca 31183294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 570 - 689
Target Start/End: Complemental strand, 16649801 - 16649682
Alignment:
Q  570 tttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||||| || |||  || |  ||||| ||||||||||  |||    
T  16649801 tttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattattg-ctactacttgtgttcactttgattgtgg 16649703  T
Q  669 ttactactttcctttgctcca 689  Q
    |||||||||||||||||||||    
T  16649702 ttactactttcctttgctcca 16649682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 575 - 689
Target Start/End: Original strand, 42927099 - 42927213
Alignment:
Q  575 cttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttact 673  Q
    ||||||||||||||||   | ||||| |||||||||||||||||||||||||||||||| |||||| || ||| ||||| | ||||||||||| ||| ||    
T  42927099 cttttgcttgtggttttgagtttttcactttgattcctagattagatctaggtgttgttattgttg-ttgttgcttgtgtttactttgatattagttgct 42927197  T
Q  674 actttcctttgctcca 689  Q
    ||||||||||||||||    
T  42927198 actttcctttgctcca 42927213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 13488373 - 13488521
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||| |||| |||||| ||||||||||||  |||  ||||||||||||||||   | ||||| |||||||| ||||||||||||||||||||||| || |    
T  13488373 cttttgtgtctttgttcctctcttctctcccttt--cttttgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattat 13488470  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||  ||||| ||||| ||||||||| |||||||| ||||||||||| |||||    
T  13488471 tg-ctattgattgtgttcactttgaaattggttattactttcctttactcca 13488521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 32636994 - 32637144
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtg-gtttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||| |||  |||||||| ||||||||  |||  | ||||| |||||||| ||||||||||||||||||||||| || |    
T  32636994 ctttggtgtgtttgtttctctcttccctccctttatcttgtgcttgtgattttgagtttttcactttgattactagattagatctaggtgttgttattat 32637093  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||| | ||| ||||| | | | ||| ||| |||||||||||||||| |||||    
T  32637094 tga-tgttgcttgtgtttagtgtgaaatttgttactactttcctttactcca 32637144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 607 - 689
Target Start/End: Complemental strand, 18441570 - 18441489
Alignment:
Q  607 ttcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||  | ||||||| |  ||||||||||||||||||||||||    
T  18441570 ttcctagattagatctaggtgctgtttt-gttgattattgcttgcacacactttgttggtggttactactttcctttgctcca 18441489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 689
Target Start/End: Complemental strand, 9789150 - 9789069
Alignment:
Q  607 ttcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||||||||| |||||| ||||||| ||| |||  | ||||||| |  ||||||||||||||||||||||||    
T  9789150 ttcctagattagatctaggtgctgtttt-gttgatttttgcttgcacacactttgttggtggttactactttcctttgctcca 9789069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 689
Target Start/End: Original strand, 16452286 - 16452396
Alignment:
Q  576 ttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggttacta 674  Q
    |||||||||||||||   |||||||  ||||||||||||||||||||||  ||||||| ||||||    ||| ||||| | || || |||||||||||||    
T  16452286 ttttgcttgtggttttgagcttttcaatttgattcctagattagatctaactgttgttattgttg----ttgcttgtgtttacgttaatattggttacta 16452381  T
Q  675 ctttcctttgctcca 689  Q
     |||||||| |||||    
T  16452382 ttttcctttactcca 16452396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 689
Target Start/End: Original strand, 533960 - 534079
Alignment:
Q  564 tctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttga 662  Q
    |||| ||||||||||||||||||||||   | ||||| |||||||| |||||||||      |||||||| || || ||| ||| |||||   |||||||    
T  533960 tctctttttatcttttgcttgtggttttgagattttcactttgattactagattag------gtgttgttattatt-attgttgcttgtgtctactttga 534052  T
Q  663 tattggttactactttcctttgctcca 689  Q
     ||||||||||||||||||||||||||    
T  534053 aattggttactactttcctttgctcca 534079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 657 - 689
Target Start/End: Complemental strand, 3075629 - 3075597
Alignment:
Q  657 ctttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| |||||||||||||||||    
T  3075629 ctttgatattggttattactttcctttgctcca 3075597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 651
Target Start/End: Original strand, 29720605 - 29720648
Alignment:
Q  607 ttcctagattagatctaggtgttgtttttgttgattattgtttgt 651  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||    
T  29720605 ttcctagattagatctaggtggtg-ttttgttgattattgcttgt 29720648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 651
Target Start/End: Original strand, 29722765 - 29722808
Alignment:
Q  607 ttcctagattagatctaggtgttgtttttgttgattattgtttgt 651  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||    
T  29722765 ttcctagattagatctaggtggtg-ttttgttgattattgcttgt 29722808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 3e-56; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 34570412 - 34570261
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||||||||||| ||||    
T  34570412 ctttggtgtgtttgttcctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattcttagattagatctaggtgttgttattgt 34570313  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  34570312 tgattattgtttgtgttcattttgatattggttactactttcctttgctcca 34570261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 56178634 - 56178483
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||| ||||    
T  56178634 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttcattcctagattagatctaggtgttgttattgt 56178535  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | ||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  56178534 ttattattgcttgtgttcactttgatattggttactactttcctttgctcca 56178483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 52082661 - 52082510
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttt-atgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||| ||||    
T  52082661 ctttggtgtgtttgtttatctcttctctccttttatcttttgcttgtggttttatgcttttctttttgattcctagataagatctaggtgctgttattgt 52082562  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  52082561 tgattattgcttgtgttcactttgatattggttactactttcctttgttcca 52082510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 48143214 - 48143369
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttct----ctttgattcctagattagatctaggtgttgttt 633  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||  ||||||| |    ||||||||||||||||||||||||||||||||     
T  48143214 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtgattttgtgcttttttttcactttgattcctagattagatctaggtgttgtta 48143313  T
Q  634 ttgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  48143314 ttgttgattattgcttgtgttcactttgatattggttactactttcctttgctcca 48143369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 540 - 689
Target Start/End: Complemental strand, 52095359 - 52095209
Alignment:
Q  540 tttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||| |||||    
T  52095359 tttggtgtgtttgtttctctcttctctccttttatcttttccttgtggttttgtgcttttctctttgactcctagattagatctaggtgttgttattgtt 52095260  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||  ||||| |||||||||||||| |||||||||||||||| ||||    
T  52095259 gattattacttgtgttcactttgatattgattactactttcctttgttcca 52095209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 5370080 - 5369929
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  5370080 ctttgatgtgtttgtttatctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgt 5369981  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||| |||||    
T  5369980 tgattattgcttgtgttcactttgatattgattactactttcctttactcca 5369929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 13992290 - 13992138
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctca-ttttatctttt-gcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||| |||| |||    
T  13992290 ctttggtgtgtttgtttctctcttctctcccttttatctttttgcttgtgatttgtgcttttcactttgatacctagattagatctaggtgctgttattg 13992191  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||  ||||||||| |||||||||||||||||||||||||||    
T  13992190 ttgattattgcttgcactcactttgttattggttactactttcctttgctcca 13992138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 47038409 - 47038263
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||||    
T  47038409 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgttgttattgt 47038314  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  47038313 tg-ttattgtttgtgtttactttgatattggttactactttcctttgttcca 47038263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 9927456 - 9927306
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||| ||||||| ||| ||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||| |||| ||||    
T  9927456 ctttggtgtgtttgttcctctattctctccttt-atcttttgcttgtggatttgtgcttttcactttgattcctagattaaatctaggtgctgttattgt 9927358  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| | |||||||||||||| |||||||||||||||||||    
T  9927357 tgattattgcttgtgtttactttgatattggtaactactttcctttgctcca 9927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 540 - 690
Target Start/End: Complemental strand, 54199904 - 54199754
Alignment:
Q  540 tttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||| |||||||||||| ||| || |||||||||||| ||| |||||||| ||||||||| ||||||||||||||||| |||| ||| |    
T  54199904 tttggtgtgtttgttcctctcttctctccttt-atattttgcttgtggatttgtgcttttcactttgattcttagattagatctaggtgatgttattgct 54199806  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctccat 690  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  54199805 gattattgcttgtgttcactttgatactggttactactttcctttgctccat 54199754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 544 - 689
Target Start/End: Original strand, 37740800 - 37740946
Alignment:
Q  544 gtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgatt 642  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||||  |||||||| |||||||||||| |||||||||||||| |||| |||||||||    
T  37740800 gtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctacattagatctaggtgctgttattgttgatt 37740899  T
Q  643 attgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||| || || |||||||||||||| ||||||||||||| |||||||    
T  37740900 attgattctgttcactttgatattgattactactttcctgtgctcca 37740946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 539 - 678
Target Start/End: Original strand, 5429849 - 5429989
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||| ||||||||||||  |||||||||| ||||||||||   ||||||| ||||||||||||||||||||||||||| |||| ||||    
T  5429849 ctttgatgtgtttgttcctctcttctctccctttatcttttacttgtggttttgagcttttcactttgattcctagattagatctaggtgctgttattgt 5429948  T
Q  638 tgattattgtttgtgctcactttgatattggttactacttt 678  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  5429949 tgattattgtttgtgttcactttgatattgattactacttt 5429989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 5871990 - 5872138
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||| ||||||||||||||  | |||||||||||| ||||||   ||||||| |||||||| ||||||||||||||||||||||| || |    
T  5871990 ctttggtgtgtttgattctctcttctctc--tctatcttttgcttttggttttgagcttttcactttgattactagattagatctaggtgttgttattat 5872087  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5872088 tg-ttgttgtttgtgttcactttgatattggttactactttcctttgctcca 5872138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 26175634 - 26175484
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| |||  ||||||| |||||||| ||||||||||||||||||||||| || |    
T  26175634 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtgttgttattat 26175535  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||  ||||| ||||| | ||||||| ||||||||||||||||||||||||||    
T  26175534 tg-ctattgcttgtgtttactttgaaattggttactactttcctttgctcca 26175484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 12739548 - 12739401
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| || |||||||||||||||||||| ||      
T  12739548 ctttggtgtgtttgttcctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattacttgattagatctaggtgttgttatt-- 12739451  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
      ||||||| ||||| | ||||||| |||||||||||||||| ||| |||||    
T  12739450 --attattgcttgtgtttactttgaaattggttactactttcttttactcca 12739401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 12743923 - 12743776
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgt-ggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||||| | ||| |||||||| |||||||| ||||||||||||||||||||||| ||      
T  12743923 ctttggtgtgtttgttcctctcttttctccttttatcttttgcttgtagttttgtgcttttcactttgattactagattagatctaggtgttgttatt-- 12743826  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
      ||| ||| ||||| | ||||||| ||||||||||||||||||||||||||    
T  12743825 --attgttgcttgtgtttactttgaaattggttactactttcctttgctcca 12743776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 46147389 - 46147243
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||| ||||| || |    
T  46147389 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctaggtattgttattat 46147294  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  46147293 tg-ttgttgcttgtgttcactttgatattggttactactttcctttgctcca 46147243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 48893636 - 48893490
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||| |||  |||||||| ||||||||| | ||||||||||||||| |||| ||||    
T  48893636 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtgattttgtgcttttcactttgattcttggattagatctaggtgctgttattgt 48893541  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  48893540 tg-ttattgcttgtgtttactttgatattggttactactttcctttgctcca 48893490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 29254664 - 29254813
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||| |||||||  |||||||||||||||||| ||| || ||||| |||||||| ||||||||||||||||||||||| || |    
T  29254664 ctttggtgtgtttgttcctctattctctccatttatcttttgcttgtggttttgtgtttttcactttgattactagattagatctaggtgttgttattat 29254763  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |  ||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  29254764 tg-tcgttgtttgtgttcactttaatattggttactacttt-ctttgctcca 29254813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 541 - 627
Target Start/End: Complemental strand, 29999805 - 29999719
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtg 627  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  29999805 ttggtgtgtttgtttctctcttctctccttttgtcttttgcttgtggtttgtgtttttctctttgattcctagattagatctaggtg 29999719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 539 - 686
Target Start/End: Complemental strand, 52467352 - 52467208
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| |||||||||||||| |||||||| || |    
T  52467352 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctatgtgttgttattat 52467257  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgct 686  Q
    |||| |||| ||||  | ||||||||||||||||| |||||||||||||    
T  52467256 tgatgattgcttgtctttactttgatattggttaccactttcctttgct 52467208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 541 - 686
Target Start/End: Original strand, 31474323 - 31474464
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||||||||||||||||    ||||  ||||||||| |||| || |||  |||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  31474323 ttggtgtgtttgtttctct----tctccctttatctttagcttttgattttgtgcttttcactttaattcctagattagatctaggtgttgttattgttg 31474418  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgct 686  Q
     || ||||||||| | |||||||||||| ||||||||||| ||||||    
T  31474419 -ttgttgtttgtgtttactttgatattgattactactttcatttgct 31474464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 569 - 689
Target Start/End: Complemental strand, 31495272 - 31495151
Alignment:
Q  569 ttttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttg--tgctcactttgatatt 666  Q
    ||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||| |||    | ||||||| |  |    
T  31495272 ttttatcttgtgcttgtgttttatgcttttcactttgtttcctagattagatctaggtgctg-ttttgttgattattgcttgcacacacactttgttgat 31495174  T
Q  667 ggttactactttcctttgctcca 689  Q
    |||||||||||||||||||||||    
T  31495173 ggttactactttcctttgctcca 31495151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 6542175 - 6542034
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||||||||||||||||  |||||    ||||||||| |||||| |||  || ||||| |||| ||||||||||||||||||||| ||||| ||||||    
T  6542175 ttggtgtgtttgtttctcttatctct----ttatctttttcttgtgattttgtgtttttcactttaattcctagattagatctaggttttgttattgttg 6542080  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
        ||| ||||| | |||||||||||||||| |||||||||||||||||    
T  6542079 ----ttgcttgtgattactttgatattggttattactttcctttgctcca 6542034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 539 - 690
Target Start/End: Complemental strand, 45687180 - 45687033
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||| |  ||||||  ||||||| |||||||||||||   ||||||| |||||||| ||||||| ||||||||||||||| || |    
T  45687180 ctttggtgtgtttgtttcttt--tctctc--tttatctgttgcttgtggttttgagcttttcactttgattactagatt-gatctaggtgttgttattat 45687086  T
Q  638 tgattattgtttgt-gctcactttgatattggttactactttcctttgctccat 690  Q
    || || ||| |||| | |  ||||||||||||||||||||||||||||||||||    
T  45687085 tg-ttgttgcttgttgtttgctttgatattggttactactttcctttgctccat 45687033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 542 - 689
Target Start/End: Original strand, 4588132 - 4588272
Alignment:
Q  542 tggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttga 640  Q
    |||||||||||||||||    |||||  ||||||||||||||||| |||  |||||||| |||||||||||| ||||||| | ||| ||||| ||||||     
T  4588132 tggtgtgtttgtttctc----ctctctctttatcttttgcttgtgattttgtgcttttcactttgattcctatattagatattggttttgttattgttg- 4588226  T
Q  641 ttattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
       ||||||||| |  |||||||| ||||||||| ||||||||||||||    
T  4588227 ---ttgtttgtgattgctttgatagtggttactattttcctttgctcca 4588272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 557 - 689
Target Start/End: Complemental strand, 36463373 - 36463243
Alignment:
Q  557 tctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctc 655  Q
    |||||||||||  |||||||||||||||||||||   | ||||| |||||||| | | ||||||||||||||||||| || ||| || ||| ||||| |     
T  36463373 tctcttctctc--tttatcttttgcttgtggttttgagtttttcgctttgattaccaaattagatctaggtgttgttattattg-ttgttgcttgtgttt 36463277  T
Q  656 actttgatattggttactactttcctttgctcca 689  Q
    |||||||||||||||| ||||||||||| |||||    
T  36463276 actttgatattggttattactttcctttactcca 36463243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 674
Target Start/End: Original strand, 36994694 - 36994824
Alignment:
Q  540 tttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||| ||||||||||||||  ||||||  |||||||||||||||||||||   | ||||| |||||||| ||||||||||||||||||||||| || ||    
T  36994694 tttggcgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagtttttcactttgattactagattagatctaggtgttgttattatt 36994789  T
Q  639 gattattgtttgtgctcactttgatattggttacta 674  Q
    | || ||| ||||| | ||||||| |||| ||||||    
T  36994790 g-ttgttgcttgtgtttactttgaaattgattacta 36994824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 650 - 689
Target Start/End: Complemental strand, 29999715 - 29999676
Alignment:
Q  650 gtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29999715 gtgctcactttgatattggttactactttcctttgctcca 29999676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 37229717 - 37229575
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||| ||||||||||||||  ||||||  |||||||||| ||| ||||||  |||||||| |||| ||||||| ||||||||||||| | ||| ||||||    
T  37229717 ttggcgtgtttgtttctct--tctctc--tttatcttttacttatggttttgtgcttttcacttt-attcctaaattagatctaggt-tggttattgttg 37229624  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     |||||| ||||  | |||||||||||||||||||||| || ||||||||    
T  37229623 -ttattgcttgttgttactttgatattggttactacttcccattgctcca 37229575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 539 - 585
Target Start/End: Complemental strand, 12745312 - 12745266
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgt 585  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||||    
T  12745312 ctttggtgtgtttgttcctctcttttctccttttatcttttgcttgt 12745266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 624
Target Start/End: Original strand, 29056531 - 29056610
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctag 624  Q
    ||||||||||||||||||| |||||    ||||||||||| |||||| ||| || ||||| | ||||||||||||||||||||||    
T  29056531 ttggtgtgtttgtttctcttttctc----tttatcttttgtttgtggttttgtgtttttcac-ttgattcctagattagatctag 29056610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 689
Target Start/End: Complemental strand, 48142373 - 48142233
Alignment:
Q  540 tttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttt-atgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||  ||||||||||  ||||||||||| ||||||||| ||| ||||| | |||||||||||||||    | | ||||||| |||||    
T  48142373 tttggtgtgtttgttt--ctcttctctc--tttatcttttgattgtggtttaatgtttttcac-ttgattcctagatta----ttgttgttgttattgtt 48142283  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |  | |||||||   | ||||| |||||||||| |||||||||||||||||    
T  48142282 g-ctgttgtttgatgttactttaatattggttattactttcctttgctcca 48142233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 671
Target Start/End: Original strand, 3913782 - 3913876
Alignment:
Q  574 tcttttgcttgtggttt-atgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattggtta 671  Q
    |||||| |||||||||| || |||||| |||||||||||||||||||| ||| || | || |||    |||||| ||||| | ||||||||||||||||    
T  3913782 tcttttacttgtggttttatacttttcactttgattcctagattagatatagatgctcttattg----ttattgcttgtgtttactttgatattggtta 3913876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 687
Target Start/End: Original strand, 24969953 - 24969982
Alignment:
Q  658 tttgatattggttactactttcctttgctc 687  Q
    ||||||||||||||||||||||||||||||    
T  24969953 tttgatattggttactactttcctttgctc 24969982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 7e-54; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 3157035 - 3157186
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  3157035 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattcctagattagatctaggtgctgttattgt 3157134  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3157135 tgattattgcttgtgttcactttgatattggttactactttcctttgctcca 3157186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 49918520 - 49918671
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||  ||||||||||||||||||| |||||| |||| ||||    
T  49918520 ctttggtgtgtttgttcctctcttctctccttttatcttttgcttgtggatttgtgcttttcattttgattcctagattagatataggtgctgttattgt 49918619  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  49918620 tgattattgcttgtgttcactttgatattggttactactttcctttgctcca 49918671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 37559865 - 37559712
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcat-tttatcttttgcttgtggttta-tgcttttctctttgattcctagatt-agatctaggtgttgttttt 635  Q
    |||||||||||||||| ||||||||||||   |||||||||||||||||||||  |||||||| |||||||||||||||| ||||||||||| |||| ||    
T  37559865 ctttggtgtgtttgttcctctcttctctcccctttatcttttgcttgtggttttgtgcttttcactttgattcctagatttagatctaggtgctgttatt 37559766  T
Q  636 gttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  37559765 gttgattattgcttgtgttcactttgatattggttactactttcctttgctcca 37559712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 13316349 - 13316199
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||| ||| |||||||||||||||||||| |||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||| |||||    
T  13316349 ctttagtgagtttgtttctctcttctctccttttatattttgcttgtggtttgtgtttttcactttgattcctagattagatctaggtgctgttattgtt 13316250  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||   |||||||| ||||| |||||||||||||||||||||    
T  13316249 gattattgcttgcattcactttgttattgattactactttcctttgctcca 13316199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 8550784 - 8550631
Alignment:
Q  539 ctttggtgtgtttgttt-ctctcttct-ctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgttttt 635  Q
    ||||||||||||||||| ||||||||| |||  |||||||| |||||||| |||  || ||||| |||||||||||||||||||||||||||||||| ||    
T  8550784 ctttggtgtgtttgttttctctcttcttctctctttatcttgtgcttgtgattttgtgtttttcactttgattcctagattagatctaggtgttgttatt 8550685  T
Q  636 gttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  8550684 gttgattattgcttgtgttcactttgatattggttactactttcctttgctcca 8550631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 834165 - 834017
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||| |||||||||| ||||||||||| ||||||||| ||||    
T  834165 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttgtggttttgagcttttcactttgattcccagattagatcttggtgttgttattgt 834068  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  834067 tg-ttattgcttgtgtttactttgatattggttactactttcctttgctcca 834017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 44455330 - 44455481
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||||   |||||||||||||| ||||||  || ||||| ||||||||||||||||||||||||||| |||| ||||    
T  44455330 ctttggtgtgtttgttcctctcttctcttcctttatcttttgcttttggttttgtgtttttcactttgattcctagattagatctaggtgctgttattgt 44455429  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||| |||||    
T  44455430 tgattattgtttgtgttcactttgatattggttaccacttttcttttctcca 44455481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 20762843 - 20762989
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||     ||||||||||||||||||| |||| ||||    
T  20762843 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactt-----cctagattagatctaggtgctgttattgt 20762937  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| |||   |||||||||||||||||| |||||||||||||||||    
T  20762938 tgattattgcttgaattcactttgatattggttaatactttcctttgctcca 20762989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 31659408 - 31659559
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||| || |||| ||||||| ||||||||||||||| ||||||  |||||||  ||||||||||||||||||||| |||||||||| ||||    
T  31659408 ctttggtgtgtttattcctcttttctctccttttatcttttgcttatggttttgtgctttttactttgattcctagattagatcaaggtgttgttattgt 31659507  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| ||| ||||||||||||||||||||| |||| |||||    
T  31659508 tgattattgcttgtgttcattttgatattggttactacttttcttttctcca 31659559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 10925396 - 10925543
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| ||||||||||| |||  ||||||  |||||||||||||||||||||   | ||||| |||||||| ||||||||||||||||||||||| ||||    
T  10925396 ctttgatgtgtttgtttatct--tctctc--tttatcttttgcttgtggttttgagtttttccctttgattactagattagatctaggtgttgttattgt 10925491  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  10925492 tgattattgcttgtgttcactttgatattgattactactttcctttgctcca 10925543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 51765568 - 51765720
Alignment:
Q  539 ctttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  ||||||  |||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||    
T  51765568 ctttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtggtttgtgcttttcactttgtttcctagattagatctaggtgttgttattg 51765667  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||  |||||||   || ||||||||||||||||||||||||    
T  51765668 ttgattattgcttgcactcacttaattagtggttactactttcctttgctcca 51765720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 539 - 666
Target Start/End: Complemental strand, 37503555 - 37503427
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| ||||||||||||  ||||||||||||||| |||||  |||||||| |||| ||||||||||||||||||||||||| | ||||    
T  37503555 ctttggtgtgtttgttcctctcttctctccctttatcttttgcttgcggttttgtgcttttcactttaattcctagattagatctaggtgttgatattgt 37503456  T
Q  638 tgattattgtttgtgctcactttgatatt 666  Q
    ||||||||| ||||| |||||||||||||    
T  37503455 tgattattgcttgtgttcactttgatatt 37503427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 28220224 - 28220074
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||| || |    
T  28220224 ctttggtgtgtttgtccctctcttctctccctttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttgttattat 28220125  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||||||||| ||||||| ||||||||||||| ||| ||||| ||||    
T  28220124 tg-ttgttgtttgtgttcactttaatattggttactaattttctttgttcca 28220074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 28223419 - 28223269
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||  ||||||||||||  ||||||||||||||||| |||  || ||||| |||||||| ||||||||||||||||||||||| || |    
T  28223419 ctttggtgtgtttgtccctctcttctctccctttatcttttgcttgtgattttgtgtttttcactttgattactagattagatctaggtgttgttattat 28223320  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  28223319 tg-ttgttgcttgtgttcactttgatattggttactactttcgtttgctcca 28223269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 3847119 - 3846968
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||| |||  ||||||| |||||||| ||| ||||||||||||||||||| || |    
T  3847119 ctttggtgtgtttgtttctctcttctctc--tttatcttttgcttgtggttttgagcttttcactttgattactatattagatctaggtgttgttattat 3847022  T
Q  638 tgattattgt---ttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    | ||| ||||   ||||| |||||||||||||||||||||||||||||| |||||    
T  3847021 t-attgttgttgcttgtgttcactttgatattggttactactttcctttactcca 3846968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 196905 - 196757
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||| |||||||||||||||  |||||||||||||||||||||   |||| || |||||||| ||||||||||| ||||||||||| || |    
T  196905 ctttggtgtgtttttttctctcttctctc--tttatcttttgcttgtggttttgagcttctcactttgattactagattagatgtaggtgttgttattat 196808  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  196807 tg-ttgttgcttgtgttcactttgatattggttactattttcctttgctcca 196757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 3189501 - 3189665
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||| || || |    
T  3189501 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttattattat 3189600  T
Q  638 tg-------attattgt------ttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||       ||||||||      ||||| ||||||||| ||||||||||||||||||||||||||    
T  3189601 tgttgttttattattgttgttgcttgtgttcactttgaaattggttactactttcctttgctcca 3189665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 3198318 - 3198482
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||| || || |    
T  3198318 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttattattat 3198417  T
Q  638 tg-------attattgt------ttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||       ||||||||      ||||| ||||||||| ||||||||||||||||||||||||||    
T  3198418 tgttgttttattattgttgttgcttgtgttcactttgaaattggttactactttcctttgctcca 3198482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 3207157 - 3207321
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||| || || |    
T  3207157 ctttggtgtgtttgtttctctcttctctccttttatcttttgcttgtggttttgtgcttttcactttgattactagattagatctaggtgttattattat 3207256  T
Q  638 tg-------attattgt------ttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||       ||||||||      ||||| ||||||||| ||||||||||||||||||||||||||    
T  3207257 tgttgttttattattgttgttgcttgtgttcactttgaaattggttactactttcctttgctcca 3207321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 539 - 686
Target Start/End: Complemental strand, 50169208 - 50169065
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| ||||||||||| ||||||||||| || |    
T  50169208 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactagattagatataggtgttgttattat 50169113  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgct 686  Q
    || || ||||||||| |||||||||||||||||||||||||| ||||||    
T  50169112 tg-ttgttgtttgtgttcactttgatattggttactactttcatttgct 50169065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 40122194 - 40122048
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||   ||||||| |||||||| ||| ||||||||||||||||||| || |    
T  40122194 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgagcttttcactttgattactaaattagatctaggtgttgttattat 40122099  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| |||||| |||||||||||||||||||||||||||||    
T  40122098 tg-ttgttgcttgtgttcacttagatattggttactactttcctttgctcca 40122048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 50167173 - 50167027
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatg--cttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||||||| ||  |||||| |||||||| ||||||||||||||||||||||| ||     
T  50167173 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttt-tgaacttttcactttgattactagattagatctaggtgttgttatta 50167079  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||| || ||  ||||| | ||||||||||||||||||||||||||||||||||    
T  50167078 ttg-ttgtttcttgtgtttactttgatattggttactactttcctttgctcca 50167027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 30476444 - 30476294
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||||||| |||  ||||||| ||||||||  |||||||| |||| |||||||| || |    
T  30476444 ctttggtgtgtttgttcctctcttctctccttttatcttttacttgtggttttgagcttttcactttgattattagattaggtctaagtgttgttattat 30476345  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| | ||||||| |||||||||||||||||||| |||||    
T  30476344 tg-ttgttgcttgtgtttactttgaaattggttactactttcctttactcca 30476294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 13137974 - 13137828
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||| |||||||||||||||  ||||||  |||||||||||||||||||||   | ||||| |||||||| ||||||||||||||||||||||| || |    
T  13137974 ctttgatgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttgaggttttcactttgattactagattagatctaggtgttgttattat 13137879  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| | ||||||| ||||||||||||||||||||||||||    
T  13137878 tg-ttgttgcttgtgtttactttgaaattggttactactttcctttgctcca 13137828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 1833683 - 1833829
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||||||| | |  ||||||  |||||||||||||||| ||||  |||||||| |||||||| ||||||||||||||||||||||| || |    
T  1833683 ctttggtgtgtttgtttattt--tctctc--tttatcttttgcttgtagttttgtgcttttcactttgattactagattagatctaggtgttgttattat 1833778  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| | ||||||| ||||||||| |||||||||| |||||    
T  1833779 tg-ttgttgcttgtgtttactttgaaattggttacgactttcctttactcca 1833829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 28265552 - 28265406
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  ||||||||||| |||||||||   ||||||  |||||||| ||||||||||||||| ||||||| || |    
T  28265552 ctttggtgtgtttgtttctct--tctctc--tttatcttttggttgtggttttgagctttttactttgattactagattagatctagatgttgttattat 28265457  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||||| ||||||||||||||| ||||| |||||||| |||||    
T  28265456 tg-ttgttgcttgtgttcactttgatattggctactattttcctttactcca 28265406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 41361087 - 41361231
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    ||||||||||||||||| |    ||||| ||||||||||| |||||||||   ||||||  |||||||||||||||||||| ||||||||||| ||||||    
T  41361087 ttggtgtgtttgtttcttt----tctcactttatcttttgtttgtggttttgagctttttactttgattcctagattagatataggtgttgttattgttg 41361182  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     || ||  ||||| | |||||||||||| ||| |||||||||||||||||    
T  41361183 -ttgttacttgtgtttactttgatattgattaatactttcctttgctcca 41361231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 541 - 689
Target Start/End: Complemental strand, 23555262 - 23555118
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttg 639  Q
    |||||| ||||||||||||  ||||||  ||||| |||||||||||||||   ||||||| || ||||||||| ||||||||||||||||||| ||||||    
T  23555262 ttggtgcgtttgtttctct--tctctc--tttatgttttgcttgtggttttgagcttttcactatgattcctaaattagatctaggtgttgttattgttg 23555167  T
Q  640 attattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     || ||| ||||| | ||||||| |||| |||||||||| ||||||||||    
T  23555166 -ttgttgcttgtgtttactttgacattgattactacttttctttgctcca 23555118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 45644352 - 45644205
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||| ||||||||||  ||||||  ||||||||||| |||||||||   ||||||| |||||||| ||||||||||||||| ||||||| || |    
T  45644352 ctttggtgtgcttgtttctct--tctctc--tttatcttttgtttgtggttttgagcttttcactttgattgctagattagatctagatgttgttattat 45644257  T
Q  638 tgattattgtttg-tgctcactttgatattggttactactttcctttgctcca 689  Q
    || || ||| ||| || |  |||||||||||||||||||||||||||||||||    
T  45644256 tg-ttgttgcttgttgtttgctttgatattggttactactttcctttgctcca 45644205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 570 - 683
Target Start/End: Complemental strand, 4552615 - 4552502
Alignment:
Q  570 tttatcttttgcttgtggtttat-gcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||||||   ||||||| |||||||| |||||||||||||| |||||||| || ||| || ||  ||||| | ||||||| |||||    
T  4552615 tttatcttttgcttgtggttttgagcttttcactttgattactagattagatctatgtgttgttattattg-ttgttacttgtgtttactttgaaattgg 4552517  T
Q  669 ttactactttccttt 683  Q
    |||||||||||||||    
T  4552516 ttactactttccttt 4552502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 689
Target Start/End: Complemental strand, 8870694 - 8870575
Alignment:
Q  570 tttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||||||  |  ||||| |||||||||||||||| ||||||||| || ||||| ||| || ||| ||||| | ||||||||| | |    
T  8870694 tttatcttttgcttgtggttttgtatttttcactttgattcctagatttgatctaggttttttttttattg-tttttgcttgtgattactttgatactag 8870596  T
Q  669 ttactactttcctttgctcca 689  Q
    |||||||||||||||| ||||    
T  8870595 ttactactttcctttgttcca 8870575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 15820479 - 15820617
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatg--cttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    |||||||||||||||||||  |||||| ||  |||  ||||||||| ||||||  ||||||| ||||||||||| ||||||||||||||||||| |||      
T  15820479 ttggtgtgtttgtttctct--tctctcctt--atccattgcttgtg-tttatgagcttttctatttgattcctatattagatctaggtgttgttgttg-- 15820571  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
         ||| ||||| | ||||||||||| ||||||||||||||||||||||    
T  15820572 -----ttgcttgtgtttactttgatattagttactactttcctttgctcca 15820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 13659334 - 13659198
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||| |||||||||||  ||||||  |||||||||||||||||||||  | ||||||  ||||||||||||||||||| |||||||||           
T  13659334 ctttggtgtatttgtttctct--tctctc--tttatcttttgcttgtggttttgtacttttca-tttgattcctagattagatttaggtgttg------- 13659247  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
       |||||| ||||| | |||||||| |||||||||||||||||||||||||    
T  13659246 ---ttattgcttgtgtttactttgatgttggttactactttcctttgctcca 13659198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 689
Target Start/End: Complemental strand, 927969 - 927830
Alignment:
Q  544 gtgtgtttgtttctctcttctctcattttatcttttgcttgtggtttatg--cttttctctttgattc-ctagattagatctaggtgttgtttttgttga 640  Q
    ||||||||||||||||  ||||||  ||||||||||| ||||||||| ||  |||||| ||||||||  ||| |||||||||| || ||||| ||||||     
T  927969 gtgtgtttgtttctct--tctctc--tttatcttttgtttgtggttt-tgaacttttcactttgattatctatattagatctaagttttgttgttgttg- 927876  T
Q  641 ttattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
       ||||||||| | ||||||||||||||||| |||| ||||| |||||    
T  927875 ---ttgtttgtgattactttgatattggttaccacttccctttactcca 927830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 689
Target Start/End: Original strand, 9987443 - 9987525
Alignment:
Q  607 ttcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttga-tattggttactactttcctttgctcca 689  Q
    ||||||||||||||||||||| || ||||||||||||||| |||  | |||||||| |  ||||||| ||| ||||||||||||    
T  9987443 ttcctagattagatctaggtggtg-ttttgttgattattgcttgcacacactttgattggtggttaccactctcctttgctcca 9987525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 683
Target Start/End: Original strand, 5460104 - 5460215
Alignment:
Q  570 tttatcttttgcttgtgg-tttatgcttttctctttgattcctagattagatctaggtgttgtttttgttgattattgtttgtgctcactttgatattgg 668  Q
    |||||||||||||||||| ||| |||||| |  |||| |||||||||| ||||||||| ||||| |||||| || ||||||| | | | |||||||||||    
T  5460104 tttatcttttgcttgtggttttgtgctttacattttg-ttcctagattcgatctaggt-ttgttcttgttg-ttgttgtttgagattattttgatattgg 5460200  T
Q  669 ttactactttccttt 683  Q
    |||||| || |||||    
T  5460201 ttactatttcccttt 5460215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 689
Target Start/End: Original strand, 36683897 - 36683930
Alignment:
Q  656 actttgatattggttactactttcctttgctcca 689  Q
    ||||||||||||||||| ||||||||||||||||    
T  36683897 actttgatattggttaccactttcctttgctcca 36683930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 590
Target Start/End: Original strand, 46065088 - 46065135
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttt 590  Q
    ||||||||||||||||  |||||||||||  |||||||||||||||||||||    
T  46065088 ctttggtgtgtttgtt--tctcttctctc--tttatcttttgcttgtggttt 46065135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 114773 - 114924
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||| ||||  |||||||| |||||||||||||||||||| ||||||||||| ||||    
T  114773 ctttggtgtgcttgtttctctcttctctccttttatctttttcttgttgttttgtgcttttcactttgattcctagattagatataggtgttgttattgt 114872  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  114873 tgattattgattgtgttcactttgatattggttattactttcctttgctcca 114924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 540 - 689
Target Start/End: Complemental strand, 20412 - 20262
Alignment:
Q  540 tttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||||  || ||||| ||||||||||||||||||||||||||| |||| |||||    
T  20412 tttggtgtgtttgttcctctcttctctccctttatcttttgcttgtggttttgtgtttttcactttgattcctagattagatctaggtgctgttattgtt 20313  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     ||||||| ||||| ||||||||| |||||||||||| |||||||||||||    
T  20312 aattattgcttgtgttcactttgacattggttactaccttcctttgctcca 20262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 540 - 689
Target Start/End: Original strand, 434705 - 434855
Alignment:
Q  540 tttggtgtgtttgtttctctcttctctca-ttttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgtt 638  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||| |||| |||||    
T  434705 tttggtgtgtttgtttctctcttctctcccttttatcttgtgcttgtgttttgtgcttttcactttgattcctagattagatctaggtgctgttattgtt 434804  T
Q  639 gattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||| |||    |||||| ||| ||||||||||||||||||||||||    
T  434805 gattattgattgaaaacactttaataatggttactactttcctttgctcca 434855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 539 - 689
Target Start/End: Original strand, 1086 - 1237
Alignment:
Q  539 ctttggtgtgttt-gtttctctcttctctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||||||| |||||||||||||||| ||||||  |||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  1086 ctttggtgtgttttgtttctctcttctctccttttatactttgcttgtggtttgtgcttttcactttgatacctagattagatctaggtggtgttattgt 1185  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    ||||||||| |||   |||| |||  ||||||||||||| ||||||| ||||    
T  1186 tgattattgcttgcattcacattgtcattggttactactatcctttgttcca 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 8732 - 8580
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcat--tttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  |||||| ||| |  |||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||    
T  8732 ctttggtgtctttgttttcctcttccctcttcttttatcttgtgcttgtggtttgtgcttttcactttgtttcctagattagatctaggtgttgttattg 8633  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||  | ||||| |  ||||||||||||||||||||||||||    
T  8632 ttgattattgcttgcacccacttagtcattggttactactttcctttgctcca 8580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 11158 - 11006
Alignment:
Q  539 ctttggtgtgtttgtttctctcttc--tctcattttatcttttgcttgtggtttatgcttttctctttgattcctagattagatctaggtgttgtttttg 636  Q
    ||||||||| |||||||  ||||||  |||| ||||||||| |||||||||||| || ||||| ||||| |||||||||||||||||||||||||| |||    
T  11158 ctttggtgtctttgttttcctcttccctctccttttatcttgtgcttgtggtttgtgtttttcactttgtttcctagattagatctaggtgttgttattg 11059  T
Q  637 ttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
    |||||||||| |||  | ||||| |  ||||||||||||||||||||||||||    
T  11058 ttgattattgcttgcacccacttagtcattggttactactttcctttgctcca 11006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 1496 - 1349
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttt-atgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||| |||| | ||    
T  1496 ctttggtgtgtttgtttctct--tctctc--tttatcttttgcttgtggttttatgtttttcactttaattcctagattagatctaggtgctgttatcgt 1401  T
Q  638 tgattattgtttgtg-ctcactttgatattggttactactttcctttgctcca 689  Q
    || |||||  |||||  | ||||| |||||| |||||||||||||||||||||    
T  1400 tg-ttattacttgtgtttaactttaatattgattactactttcctttgctcca 1349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 541 - 689
Target Start/End: Original strand, 11731 - 11887
Alignment:
Q  541 ttggtgtgtttgtttctctcttctctca-ttttatcttttgcttgtggtttatgcttttct-----ctttg-attcctagattag-atctaggtgttgtt 632  Q
    ||||||| ||||||| |||||||||||  ||||||||| |||||||| |||||  |||| |     ||||| ||||||||||||| ||||||||| ||||    
T  11731 ttggtgtatttgtttatctcttctctcccttttatcttgtgcttgtgttttattgttttttttccactttgtattcctagattagtatctaggtgctgtt 11830  T
Q  633 tttgttgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
     ||||||||||||| |||  | ||||||| || ||||||||||||||||||||||||    
T  11831 attgttgattattgcttgcacacactttgttagtggttactactttcctttgctcca 11887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 149095 - 148959
Alignment:
Q  539 ctttggtgtgtttgtttctctcttctctcattttatcttttgcttgtggttta-tgcttttctctttgattcctagattagatctaggtgttgtttttgt 637  Q
    ||||||||| |||||||||||  ||||||  |||||||||||||||||||||  | ||||||  ||||||||||||||||||| |||||||||           
T  149095 ctttggtgtatttgtttctct--tctctc--tttatcttttgcttgtggttttgtacttttca-tttgattcctagattagatttaggtgttg------- 149008  T
Q  638 tgattattgtttgtgctcactttgatattggttactactttcctttgctcca 689  Q
       |||||| ||||| | |||||||| |||||||||||||||||||||||||    
T  149007 ---ttattgcttgtgtttactttgatgttggttactactttcctttgctcca 148959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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