View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_43 (Length: 341)
Name: NF15927_low_43
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 1882216 - 1882529
Alignment:
| Q |
19 |
aactcatatggagcttaccattgtggacgacgaatannnnnnnnnnnnnnnnngggattggttaaacaaattcgtcttcgcctgcccctctcttcactct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1882216 |
aactcatatggagcttaccattgtggacgacgaatattcttcttcttcttcttgggattggttaaacaaattcgtctccgcctgcccctctcttcactct |
1882315 |
T |
|
| Q |
119 |
tgtgattcattataagtattgttagnnnnnnnnnngtttaatcttaatcttaactatagttatttatttatgactgatgatagtcattttgaaattacat |
218 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1882316 |
tgtgattcattataagtattgttagttttttttttgtttaatcttaatcttaactatagttatttatttatgactgatgatagtcattttgaaattacat |
1882415 |
T |
|
| Q |
219 |
ttttcatgattgttgagttgtgttgctttgtgctgctcatgtttgtagcctacacatgtgtttataattaataatcgcatctcttgattaccttttagcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1882416 |
ttttcatgattgttgagttgtgttgctttgtgctgctcatgtttgtagcctacacatgtgtttataattaataatcgcatctcttgattaccttttagcg |
1882515 |
T |
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| Q |
319 |
gtcctttgcttctc |
332 |
Q |
| |
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|||||||| ||||| |
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| T |
1882516 |
gtcctttgtttctc |
1882529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 44636446 - 44636362
Alignment:
| Q |
159 |
atcttaatcttaactatagttatttatttatgactgatgatagtcattttgaaattac-atttttcatgattgttgagttgtgttg |
243 |
Q |
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| T |
44636446 |
atcttcatcttaaccctagttatttatttatcactaa-gatagtcattttgaaattactagttttcatgattgttgagttgtgttg |
44636362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 4142152 - 4142235
Alignment:
| Q |
159 |
atcttaatcttaactatagttatttatttatgactgatgatagtcattttgaaatta-catttttcatgattgttgagttgtgttg |
243 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||| || |||||||||||||| ||||||||| |
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| T |
4142152 |
atcttaatcttaactatagttttttacttatgactgatg--agtcattttgacattaccagttttcatgattgttaggttgtgttg |
4142235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 41542085 - 41542119
Alignment:
| Q |
19 |
aactcatatggagcttaccattgtggacgacgaat |
53 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
41542085 |
aactcatatggagcttaccattgtggaggacgaat |
41542119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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