View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15927_low_45 (Length: 328)
Name: NF15927_low_45
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 40727605 - 40727848
Alignment:
| Q |
8 |
tgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctccaggaaataattttgcaagagcaagtgaaagaaaattctattgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40727605 |
tgagaagaaaatattgtttaaattcaacttatactattttttttatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaattctattgt |
40727704 |
T |
|
| Q |
108 |
gagaagctggtggacggtgggggtgatagaggatactgacagatagttnnnnnnnnnnnnagtactctttgannnnnnnnnnnnnaattgttttcaaatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
40727705 |
gagaagctggtggacggtgggggtgatagaggatagtgacagatagttgagagagagagaagtactcattgatttttatttttttaattgttttcaaatt |
40727804 |
T |
|
| Q |
208 |
gctttaaaataaatagaattgttttcacaacctgtagcaactgc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40727805 |
gctttaaaataaatagaattgttttcacaacctgtagcaactgc |
40727848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 5278070 - 5278300
Alignment:
| Q |
8 |
tgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctccaggaaataattttgcaagagcaagtgaaagaaaattctattgt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5278070 |
tgagaagaaaatattgtttaaattcaacttatatcattttttttatacaacttctccagaaaataattttgcaagagcaaatgaaagaaaattctattgt |
5278169 |
T |
|
| Q |
108 |
gagaagctggtggacggtgggggtgatagaggatactgacagatagttnnnnnnnnnnnnagtactctttgannnnnnnnnnnnnaattgttttcaaatt |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
5278170 |
gagaagctggtggacggtggaggtgatagaggatactgacagatagttgagagagagagaagtactcattgatttttatttttttaattgttttcaaatt |
5278269 |
T |
|
| Q |
208 |
gctttaaaataaatagaattgttttcacaac |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5278270 |
gctttaaaataaatagaattgttttcacaac |
5278300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 53870295 - 53870442
Alignment:
| Q |
8 |
tgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctccaggaaataattttgcaagagcaagtgaaagaaaattctattgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53870295 |
tgagaagaaaatattgtttaaattcaacttataccattttttttatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaattctattgt |
53870394 |
T |
|
| Q |
108 |
gagaagctggtggacggtgggggtgatagaggatactgacagatagtt |
155 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53870395 |
gagaagctggtggacggtggaggtgatagaggatactgacagatagtt |
53870442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 53870484 - 53870530
Alignment:
| Q |
193 |
aattgttttcaaattgctttaaaataaatagaattgttttcacaacc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53870484 |
aattgttttcaaattgctttaaaataaatataattgttttcacaacc |
53870530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 624844 - 624729
Alignment:
| Q |
8 |
tgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctccaggaaataattttgcaagagcaagtgaaagaaaattctattgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
624844 |
tgagaagaaaatattgtttaaattcaacttataccattttttttatacaacttctccaggaaataattttgcaagagcaaatgaaagaaaattctattgt |
624745 |
T |
|
| Q |
108 |
gagaagctggtggacg |
123 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
624744 |
gagaagctggtggacg |
624729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 624671 - 624642
Alignment:
| Q |
193 |
aattgttttcaaattgctttaaaataaata |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
624671 |
aattgttttcaaattgctttaaaataaata |
624642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University