View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_46 (Length: 312)
Name: NF15927_low_46
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_46 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 176 - 312
Target Start/End: Original strand, 7645640 - 7645776
Alignment:
| Q |
176 |
tctaactgcaaatacatgtgtttattgcataaaccactacacacaagaaaaacctaagcatttgcgctgctctggtgcctagctttttccttctctttca |
275 |
Q |
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| T |
7645640 |
tctaactgcaaatacatgtgtttattgcataaaccactacacacaagaaaaacctaagcattggcgctgctctggtgcctagctttttccttctctttca |
7645739 |
T |
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| Q |
276 |
cctcgcttccctgtgtcttgtcataatcttcatgcac |
312 |
Q |
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| T |
7645740 |
cctcgcttccctgtgtcttgtcataatcttcatgcac |
7645776 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 7645446 - 7645523
Alignment:
| Q |
18 |
caaaatttcggcagcctcttaaagtggattttctaccgaagtattgattattaaatcggtaacataatacttatacat |
95 |
Q |
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| T |
7645446 |
caaaaattcggcagcctcttaaagtggattttctactgaagtattgattattaaatcggtaacataatacttgtacat |
7645523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 7645542 - 7645583
Alignment:
| Q |
78 |
aacataatacttatacataattgtccatattatcactctgag |
119 |
Q |
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| T |
7645542 |
aacataatacttatacataattgtccatattatcactctgag |
7645583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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