View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_47 (Length: 310)
Name: NF15927_low_47
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 5952747 - 5953042
Alignment:
| Q |
11 |
taattctttatcgttataaatgacactatatttcaaatgct---------------aaatattggcatttttattctgagatcaagctttggagaaaaat |
95 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952747 |
taattctttatcgttataaaggacactatatttcaaatgcttattgttctaagtgcaaatattggcatttttattctgagatcaagctttggagaaaaat |
5952846 |
T |
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| Q |
96 |
ttaatgaagttaacaatgtaaattatgcttatcaatacatggtcacttataagaaagtcctcaaatttagtttgtatctcttggcaattccttacatctc |
195 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952847 |
ttaatgaagttaacaatgtaaattattcttatcaatacatggtcacttataagaaagtcctcaaatttagtttgtatctcttggcaattccttacatctc |
5952946 |
T |
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| Q |
196 |
gtataacaaactttttctccttttatctaatttgagctcaaatttatttcacactatatctacatactctcatatcatatctctagctctcccctc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952947 |
gtataacaaactttttctccttttatctaatttgagctcaaatttatttcacactatatctacatactctcatatcatatctctagctctcccctc |
5953042 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 24353514 - 24353470
Alignment:
| Q |
208 |
ttttctccttttatctaatttgagctcaaatttatttcacactat |
252 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
24353514 |
ttttctccttttatctaacttgagctcaaatttattttacactat |
24353470 |
T |
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