View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_49 (Length: 307)
Name: NF15927_low_49
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 14757435 - 14757159
Alignment:
| Q |
15 |
gacagacatgttatcagcatttaaaatgcccatatcacgtacatcaaagttcatttcagcattcttactaacaaacatgtaaacattatcaacaacactc |
114 |
Q |
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| T |
14757435 |
gacagacatgttatcagcatttaaaatgcccatatcacgtacatcaaagttcatttcagcatttttactaacaaacatgtaaacattatcaacaacactc |
14757336 |
T |
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| Q |
115 |
tttggatcagcctctccaactgcaggacctataccccagtcagcaaacagagttgtcccaggtgtagagtcgaatcgtgctatttcagcacacacagttg |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
14757335 |
tttggatcagcctctccaacagcaggacctataccccagtcagcaaacagagttgtcccaggtgtagagtcgaatcttgctatttcagcacatacagttg |
14757236 |
T |
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| Q |
215 |
cagcagaagtgttttgctgcatcagttctttgatccgatcatatggcattcgtgttatttgccaatatcgtgtgatc |
291 |
Q |
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| T |
14757235 |
cagcagaagtgttttgctgcatcagttctttcatccgatcatatggcattcgtgttatttgccaatatcgtgtgatc |
14757159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 3613612 - 3613364
Alignment:
| Q |
15 |
gacagacatgttatcagcatttaaaatgcccatatcacgtacatcaaagttcatttcagcattcttactaacaaacatgtaaacattatcaacaacactc |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
3613612 |
gacagacatgttatcagcattcaaaatgcccatatcacgtacatcaaagttcatttcaacattcttactaacaaacatgtaaacattatcaacaaaactc |
3613513 |
T |
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| Q |
115 |
tttggatcagcctctccaactgcaggacctataccccagtcagcaaacagagttgtcccaggtgtagagtcgaatcgtgctatttcagcacacacagttg |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||| ||||| | |
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| T |
3613512 |
tttggatcagcc--------------------accccagtcagcaaacagagttgtcccaggtgtagactcaaatgttgcaatttcagcaagaacagtag |
3613433 |
T |
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| Q |
215 |
cagcagaagtgttttgctgcatcagttctttgatccgatcatatggcattcgtgttatttgccaatatc |
283 |
Q |
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|||| | | |||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3613432 |
cagctggtgagttttgatgcattagctctttcatccgatcatatggcattcgtgttatttgccaatatc |
3613364 |
T |
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