View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_53 (Length: 300)
Name: NF15927_low_53
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26099500 - 26099739
Alignment:
| Q |
1 |
gattatcattccctggttgagtagctaaagataattttaactctccaagaaggaagagagagtaaaatgttagtatcaagaaaattggatttcttttcat |
100 |
Q |
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| T |
26099500 |
gattttcattctttggttgagtagctaaagatgattttaactctccaagaaggaagagagagtaaaatgttagtatcaagaaaattggatttcttttcat |
26099599 |
T |
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| Q |
101 |
gtttagcattcttttgatgagtatgcttgttagctcccacgcccacacatttatataagaagccattggacgaattaaagtaaata---------aaaag |
191 |
Q |
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| T |
26099600 |
gtttagcattctttagatgagtatgcttgttagctcccacgctcacaaatttatataagaagccattggacgaattaaagtaaataaattaggataaaag |
26099699 |
T |
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| Q |
192 |
tattttagaagaagtaaacacaaagcgtatgaatatcaatg |
232 |
Q |
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| T |
26099700 |
tattttagaagaagtaaacac-aagcgtatgaatatcaatg |
26099739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 48370576 - 48370509
Alignment:
| Q |
120 |
agtatgcttgttagctcccacgcccacacatttatataagaagccattggacgaattaaagtaaataa |
187 |
Q |
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| T |
48370576 |
agtatgcttgttagctcccgccctcacacatttatataaaaagccattggactagttaaagtaaataa |
48370509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 53434734 - 53434806
Alignment:
| Q |
114 |
ttgatgagtatgcttgttagctcccacgcccacacatttatataagaagccattggacgaattaaagtaaataa |
187 |
Q |
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| T |
53434734 |
ttgatgagtatgcttattagctccccctcgcacacatttatataagaagcca-cggactagttaaagtaaataa |
53434806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 53434620 - 53434678
Alignment:
| Q |
47 |
aagaaggaagagagagtaaaatgttagtatcaagaaaattggatttcttttcatgttta |
105 |
Q |
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| T |
53434620 |
aagaaggaagagtgagtaaaacactaatatcaataaaattggatttcctttcatgttta |
53434678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 53426411 - 53426525
Alignment:
| Q |
1 |
gattatcattccctggttgagtagctaaagataattttaactctccaag---aaggaagagagagtaaaatgttagtatcaagaaaattggatttctttt |
97 |
Q |
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|||| |||||| ||| ||||| || ||| ||| || || |||||||||| ||||||||| ||||||||| |||||| ||| | || || ||||| ||| |
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| T |
53426411 |
gattgtcattctctgattgaggagttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttccttt |
53426510 |
T |
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| Q |
98 |
catgtttagcattct |
112 |
Q |
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| T |
53426511 |
catgtttagtattct |
53426525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 53435701 - 53435741
Alignment:
| Q |
192 |
tattttagaagaagtaaacacaaagcgtatgaatatcaatg |
232 |
Q |
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| T |
53435701 |
tattatagaagaagaaaacacaaaccgtatgaatatcaatg |
53435741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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