View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_56 (Length: 285)
Name: NF15927_low_56
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 19457256 - 19456998
Alignment:
| Q |
1 |
tgacattatcacatgacttaagagttggatgcaacatttctacagaaactcttattctgcaacgaaatgcataaactgatattcatacaacagttgacaa |
100 |
Q |
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| T |
19457256 |
tgacattatcacatgacttaagagttggatgcaacatttctacagaaactcttattctgcaacgaaatgcataaactgatattcatacaaca-------- |
19457165 |
T |
|
| Q |
101 |
cattaatgcaaccattcgctgagttgtataaaaagtttacaatgaacaaaaacattacaacaagtgaaagtttaattcagcagcaaaaacattcacatat |
200 |
Q |
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| T |
19457164 |
--ttaatgcaaccattcgctgagttgtataaaaagtttacaatgaacaaaaacattacaacaagtgaaagtttaattcagcagcaaaaacattcacatat |
19457067 |
T |
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| Q |
201 |
gatccatcacaatacttgactctgttggaaagttatatccatgatttgcaaagctatgcgagatcttcc |
269 |
Q |
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| T |
19457066 |
gatccatcacaatacttgactctgtcggaaagttatatccatgatttgcaaagctatgcaagatcttcc |
19456998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 19355559 - 19355513
Alignment:
| Q |
124 |
ttgtataaaaagttta-caatgaacaaaaacattacaacaagtgaaa |
169 |
Q |
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| T |
19355559 |
ttgtataaaaggtttttcaatgaacaaaaacattacaacaagtgaaa |
19355513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 19440059 - 19439977
Alignment:
| Q |
104 |
taatgcaaccattcgctgagttgtataaaaagtttacaatgaacaaaaacattacaacaagtgaaagtttaattcagcagcaa |
186 |
Q |
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| T |
19440059 |
taatgcaaccattccctaacttgtataaaaaataatcaatgaacaaaaacattaaaacatgtgaaacatgaattcagaagcaa |
19439977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 24493008 - 24493110
Alignment:
| Q |
78 |
gatattcatacaacagttgacaacattaatgcaaccattcgctgagttgtataaaaagttta-caatgaacaaaaacattacaacaagtgaaagtttaat |
176 |
Q |
| |
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|||||| ||| ||||||||||||| | |||||| ||||| | || | |||| |||||||| |||| || ||||||||||||||||||||||| | ||| |
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| T |
24493008 |
gatatttatagaacagttgacaacttgaatgcattcattcccagactagtatcaaaagtttttcaattaataaaaacattacaacaagtgaaagatgaat |
24493107 |
T |
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| Q |
177 |
tca |
179 |
Q |
| |
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||| |
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|
| T |
24493108 |
tca |
24493110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 8461527 - 8461434
Alignment:
| Q |
89 |
aacagttgacaacattaatgcaaccattcgctgagttgtataaaaagtttacaatgaacaaaaacattacaacaagtgaaagtttaattcagcag |
183 |
Q |
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||||||||||||||| ||| ||||| ||| || | ||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||| |
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| T |
8461527 |
aacagttgacaacatgaatccaacc-ttcccttacttgtataaaaagttttcaatgaacaaaaactttacaacaagtgaaagatgtattcagcag |
8461434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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