View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_61 (Length: 266)
Name: NF15927_low_61
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 33247700 - 33247953
Alignment:
| Q |
1 |
caacaaggctaaatctgcatttatattgttgcatgtcaatgttaaacctattgattcaattactcctacaatgaaatttgtactaaacatgttcaattgt |
100 |
Q |
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| T |
33247700 |
caacagggctaaatctgcatttatattgttgcatgtcaatgttaaaactattgattcaattactcctgcaatgaaatttgtactaaacatgttcaattgt |
33247799 |
T |
|
| Q |
101 |
ttgaatgtactgcagataccatgaaagattagatatgagctcttaccaagaaatgaattgctctttacaacttacaaatatgaaagaatcagtgagattg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
33247800 |
ttgaatgtactgcatgtaccatgaaagattagatatgagctcttaccaagaaatgaattgctctttacaacttacaaatatgaaagaatcggtaagattg |
33247899 |
T |
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| Q |
201 |
tttacaacttctaactacaatatttaacgtatttaacaaaagcgttagagcttc |
254 |
Q |
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| T |
33247900 |
tttacaacttctaactacaatatttaacgtattaaacataagtgttagagcttc |
33247953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 20643698 - 20643944
Alignment:
| Q |
7 |
ggctaaatctgcatttatattgttgcatgtcaatgttaaacctattgattcaattactcctacaatgaaatttgtactaaacatgttcaattgtttgaat |
106 |
Q |
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| T |
20643698 |
ggctaaatctgcatttatattgttgtatgtaaatgttaaaactgttgattcaattgctcctacaatgaaatttgtactaaacatgttcaattgtttgaat |
20643797 |
T |
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| Q |
107 |
gtactgcagataccatgaaagattagatatgagctcttaccaagaaatgaattgctctt--tacaacttacaaatatgaaagaatcagtgagattgttta |
204 |
Q |
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| T |
20643798 |
gaactgcatgtaccatgaaagattagatatgagctcttaccaagaaatgaattgctctttctacgacttacaaatatgaaagaatcggtgagattgttta |
20643897 |
T |
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| Q |
205 |
caacttctaactacaatatttaacgtatttaacaaaagcgttagagc |
251 |
Q |
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| T |
20643898 |
caacttctaactacaatatttaacgtatttaacataagcgttagagc |
20643944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 29372846 - 29372669
Alignment:
| Q |
10 |
taaatctgcatttatattgttgcatgtcaatgttaaacctattgattcaattactcctacaatgaaatttgtactaaacatgttcaattgtttgaatgta |
109 |
Q |
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|||||||||| ||||||||||| |||| |||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||||| |
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| T |
29372846 |
taaatctgcacttatattgttgaatgtatatgttaaaactattgattcaattgctcctgcaataaaatttgtactaaacatgttcaattgttcgaatgta |
29372747 |
T |
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| Q |
110 |
ctgcagataccatgaaagattagatatgagctcttaccaagaaatgaattgctctt---tacaacttacaaatatgaaaga |
187 |
Q |
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| T |
29372746 |
ctgcagataccatgaaagat---atatgagctcttaccaataaatgaattcctcttttctacagcttacaaatatgaaaga |
29372669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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