View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_69 (Length: 243)
Name: NF15927_low_69
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 5411401 - 5411189
Alignment:
| Q |
15 |
aatataggtttcgtttctatgttgacactgttcggattatataattaaaaatgtgtcaattgatacattgtaatacgttttggaatgttataaataatcc |
114 |
Q |
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| T |
5411401 |
aatataggtttcgtttctatgttgacactgttcggattatataattaaaaatgtgtcaattgatacattgtaatacgttttggaatgttataaataatcc |
5411302 |
T |
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| Q |
115 |
ggaaattttccttgaaattttagggttttcgaatcatataattcaaaaatctttaaaaagacgtttggattatataatctaaacatgagtgttttgagaa |
214 |
Q |
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| T |
5411301 |
ggaaattttccttgaaattttagggttttcgaatcatattattcaaaaatctttaaaaagacgtttggattatataatctaaacatgagtgttttgagaa |
5411202 |
T |
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| Q |
215 |
ttcggtaagacac |
227 |
Q |
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| T |
5411201 |
ttcggtaagacac |
5411189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 2286827 - 2286780
Alignment:
| Q |
151 |
tataattcaaaaatctttaaaaagacgtttggattatataatctaaac |
198 |
Q |
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| T |
2286827 |
tataattcaaaaatctctaaaaaaaagtttggattatataatccaaac |
2286780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 2423659 - 2423599
Alignment:
| Q |
138 |
ggttttcgaatcatataattcaaaaatctttaaaaagacgtttggattatataatctaaac |
198 |
Q |
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| T |
2423659 |
ggtttttgaattgtataatccaaaaatccttaaaaagaagttcggattatataatccaaac |
2423599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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