View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15927_low_74 (Length: 235)
Name: NF15927_low_74
Description: NF15927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15927_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 18145888 - 18146116
Alignment:
| Q |
1 |
caagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagtttgactacatgaggaataagcttgccgttacctttgattgtttca |
100 |
Q |
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| T |
18145888 |
caagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagtttgccgttacctttgattgtttca |
18145987 |
T |
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| Q |
101 |
aacaaagtctgatcagtaggtttaagagtagccctagcagttcctttgttggcacgatttcgcttcgattttggaacctgacgcgcttcttcagattctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18145988 |
aacaaagtctgatcagtaggtttaagagtagccctagcagttcctttgttggcacgatttcgctttgattttggaacctgacgcgcttcttcagattctt |
18146087 |
T |
|
| Q |
201 |
cagccgtatctacaccggctccaatttcctttg |
233 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
18146088 |
cagccgtat----accggctccaatttcctttg |
18146116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 18219773 - 18219582
Alignment:
| Q |
1 |
caagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagtttgactacatgaggaataagcttgccgttacctttgattgtttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
18219773 |
caagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccgttacctttgattgtttca |
18219674 |
T |
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| Q |
101 |
aacaaagtctgatcagtaggtttaagagtagccctagcagttcctttgttggcacgatttcgcttcgattttggaacctgacgcgcttcttc |
192 |
Q |
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| T |
18219673 |
aacaaagtctgatcagtaggtttaagcgtcgccccagcagttcctttgttagcacgattttgcttcgatttaggaaccggacgtgcttcttc |
18219582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 43843691 - 43843783
Alignment:
| Q |
1 |
caagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagtttgactacatgaggaataagcttgccgttacctttgat |
93 |
Q |
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|||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
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| T |
43843691 |
caagagctcaaccatagcagatcttggatccttttcgtagctttcaacccaaagtttgaccacatgaggaataagttttccgttacctttgat |
43843783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 43844129 - 43844197
Alignment:
| Q |
103 |
caaagtctgatcagtaggtttaagagtagccctagcagttcctttgttggcacgatttcgcttcgattt |
171 |
Q |
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|||||||| ||||||||||||||| |||| |||| |||||||| || ||||||||||||||||||| |
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| T |
43844129 |
caaagtctcatcagtaggtttaagcgtagtgctagtagttccttctttaacacgatttcgcttcgattt |
43844197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19862879 - 19862787
Alignment:
| Q |
1 |
caagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagtttgactacatgaggaataagcttgccgttacctttgat |
93 |
Q |
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|||||||||| |||| |||||| || |||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||| |
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| T |
19862879 |
caagagttcatccatcgcagatctttgatccttttcgtagctttcaacccaaagtttgacagcatgaggaataagtttgccattatctttgat |
19862787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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